ViewGene
Locus Name:
GeneID:
Location:

GeneID:242
TrivialName: PA14_15070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15070
PAO1 Ortholog Locus:PA3790
Sequence Length:2172
Protein Length:723
Start: 1276607
Stop: 1278778
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07177.1|AE004797_12 (AE004797) Putative copper transport outer membrane porin OprC precursor [Pseudomonas aeruginosa PAO1]
Identities = 723/723 (100%), Positives = 723/723 (100%)
Sequence:
ATGGAAAAACGTATGTCTACTCAACAACGAGCGGCCGGCAACGCCTGCCCGACCGCCGCTTTCAGCTTCGAC
CCTGCCCGTCTCGCACAACGCCGCCGCTGGGCGGGAGCCTTCGCCGCACTGTGCGGCCTGGCCCTGTCTCCG
TCGGCGCTCCTGGCCGAGGAGCACTCCCAGCACCAGGATCACGCCGTGGAGCTGGCGCCGAGCGTGGTCACC
GGAGTCGCCCAGAGTTCGCCGCTGACCATCGTCACCAATCCCAAGGAGCCGCGCCAACCGGTACCGGCCAGC
GATGGGGCCGACTACCTGAAGACCATTCCCGGCTTCGCGGTGATCCGCAACGGCGGCAGCAACGGCGACCCG
GTGCTGCGCGGGATGTTCGGTTCGCGCCTGAACATCCTCACCAACGGCGGCATGATGCTCGGTGCCTGTCCG
AACCGGATGGACGCGCCGACCTCCTACATCTCGCCGGAAACCTACGACAAGCTCACCGTGATCAAGGGCCCG
CAGACGGTGCTCTGGGGGCCGGGCGCGTCGGCCGGGACGATCCTCTTCGAGCGTGAGCCGGAGCGCTTCGGC
GAACTCGGCTCGCGGGTCAACGCCAGCCTGCTGGCCGGCTCCAATGGCCGCTTCGACAAGGTGCTGGACGCC
GCCGCCGGCAACCGGCTCGGCTACCTGCGCTTCACCGGCAACCACGCGCAGTCCGACGATTACGAGGACGGC
GCCGGGAATACCGTGCCGTCGCGCTGGAAGAAGTGGAACGGCGACGTCGCGGTCGGCTGGACCCCCGACGAG
GACACCCTGATCGAACTCACCGCCGGCAAGGGCGACGGCGAGGCACGTTACGCCGGGCGCGGCATGGACGGC
TCGCAGTTCAAGCGCGAGAGCCTGGGCCTGCGCTTCGTCAAATCGAACGTCAGCGATGTGCTGGAGAAGGTC
GAGGCGCAGGTCTACTACAACTACGCCGACCACATCATGGACAACTTCCGCCTGCGCACTCCCGACCCGTCC
AGCATGATGCCCATGCCGATGGCGTCCCAGGTGGACCGACGCACCCTCGGCGGTCGCCTGGCGGCCACCTGG
CGCTGGGACGACTTCAAGCTGGTCACCGGGGTCGACGCCATGCGCAACGAGCACCGCGCGCGCGGCTCCAAG
TACGACATGATGACCGACTACTACACCGACGCCGACCAGTTCCCCTGGAGCAAGGACGCGGTGTTCCACAAC
TACGGGGCCTTCGGCGAACTGACCTGGTTCGCCGCCGAGCGCGACCGGCTGATCGGCGGGTTGCGCCTGGAC
CGCGCCTCGGTCAAGGACTACCGGCAGACCCTGAAGTCCGGGCACATGGGCCACGCCATGGCCAACCCGACG
GCCAACGACACCCGCGCCGATACCTTGCCCAGCGGCTTCGTGCGCTACGAGCATGACCTTGCCGACTCGCCG
ACCACCCTCTACGCCGGCCTTGGCCATGCCGAGCGCTTCCCCGACTACTGGGAGCTGTTCTCGCCCAAGCGC
GGGCCGAACGGGTCGGTCAACGCCTTCGACAAGATCAAGCCGGAAAAGACCACCCAGCTCGACTTCGGCCTC
CAGTACAACGGCGACAAGCTGCAGGCCTGGGCCTCCGGCTACGTCGGGGTGGTCCAGGACTTCATCCTGTTC
AGCTATCGCGAGGGCATGATGGGCTCCTCGACCCAGGCGACCAACGTCGACGCGCGGATCATGGGCGGCGAG
CTGGGCGCTTCCTACCAGCTCACCGGCAACTGGAAGACCGACGCCAGCCTGGCCTATGCCTGGGGCAAGAAC
AGCTCGGACGACCGCGCGCTGCCGCAGATCCCGCCGCTGGAAGCGCGCTTCGGCCTGACCTACGAGGAAGGC
GACTGGAGTGCCGGCAGCCTGTGGCGGGTGGTCGCGCCGCAGAATCGTATCGCCAGGGACCAGGGCAACGTG
GTCGGCAAGGACTTCGACAAGAGCGCCGGCTTCGGCGTCTTCTCGCTCAACGGCGCCTACCGGGTGACTCGC
AACGTCAAGCTGAGCGCCGGTGTCGATAACCTGTTCGACAAGGATTACACCGAGCACCTGAACAAGGCCGGC
GACGCCGGCTTCGGTTTCTCCGCCAACGAAACGGTTCCAGAGCCGGGCCGGACCTTCTGGACCAAGGTCGAC
TTCAGCTTCTGA
Translation:
MEKRMSTQQRAAGNACPTAAFSFDPARLAQRRRWAGAFAALCGLALSPSALLAEEHSQHQDHAVELAPSVVT
GVAQSSPLTIVTNPKEPRQPVPASDGADYLKTIPGFAVIRNGGSNGDPVLRGMFGSRLNILTNGGMMLGACP
NRMDAPTSYISPETYDKLTVIKGPQTVLWGPGASAGTILFEREPERFGELGSRVNASLLAGSNGRFDKVLDA
AAGNRLGYLRFTGNHAQSDDYEDGAGNTVPSRWKKWNGDVAVGWTPDEDTLIELTAGKGDGEARYAGRGMDG
SQFKRESLGLRFVKSNVSDVLEKVEAQVYYNYADHIMDNFRLRTPDPSSMMPMPMASQVDRRTLGGRLAATW
RWDDFKLVTGVDAMRNEHRARGSKYDMMTDYYTDADQFPWSKDAVFHNYGAFGELTWFAAERDRLIGGLRLD
RASVKDYRQTLKSGHMGHAMANPTANDTRADTLPSGFVRYEHDLADSPTTLYAGLGHAERFPDYWELFSPKR
GPNGSVNAFDKIKPEKTTQLDFGLQYNGDKLQAWASGYVGVVQDFILFSYREGMMGSSTQATNVDARIMGGE
LGASYQLTGNWKTDASLAYAWGKNSSDDRALPQIPPLEARFGLTYEEGDWSAGSLWRVVAPQNRIARDQGNV
VGKDFDKSAGFGVFSLNGAYRVTRNVKLSAGVDNLFDKDYTEHLNKAGDAGFGFSANETVPEPGRTFWTKVD
FSF*
AnnotationID:252GeneID:242
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 10:10:11
Gene Name:oprC
Confidence Code:1
GeneProduct:outer membrane copper receptor OprC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00593,COG1629,COG4771
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70407.1|AE016682_9 (AE016792) outer membrane copper receptor OprC [Pseudomonas putida
           KT2440]
          Length = 688

 Score = 1040 bits (2688), Expect = 0.0
 Identities = 507/692 (73%), Positives = 570/692 (82%), Gaps = 21/692 (3%)

>emb|CAD45553.1| (AJ507426) outer membrane protein NosA precursor [Pseudomonas
           stutzeri]
          Length = 719

 Score =  793 bits (2049), Expect = 0.0
 Identities = 416/692 (60%), Positives = 492/692 (71%), Gaps = 30/692 (4%)






 
Structural Features:
pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues, 100.0% aligned
Score =  244 bits (623), Expect = 6e-65
Identities = 161/734 (21%), Positives = 244/734 (33%), Gaps = 108/734 (14%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  99.6% aligned
Score =  163 bits (411), Expect = 2e-40
Identities = 157/773 (20%), Positives = 241/773 (31%), Gaps = 74/773 (9%)

COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins 
[Inorganic ion transport and metabolism]
CD-Length = 699 residues,  98.3% aligned
Score =  117 bits (295), Expect = 8e-27
Identities = 146/736 (19%), Positives = 248/736 (33%), Gaps = 101/736 (13%)






   
Genomic Context:






   
Comment:


















    ReferenceID:487




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17629




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31767




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:242_cdd.html


    		




 
URL:

















    ReferenceID:34275




  
Author/Investigator(s):
        Yoneyama H, Nakae T.





  
Title:
        Protein C (OprC) of the outer membrane of Pseudomonas aeruginosa is a copper-regulated channel protein.




  
PubMed:
        8760927


MedLine:
        




    
Source:
Microbiology. 1996 Aug;142 ( Pt 8):2137-44.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8760927

















    ReferenceID:34276




  
Author/Investigator(s):
        Lian Z, Tianjue Y.





  
Title:
        Role of outer membrane proteins in imipenem diffusion in Pseudomonas aeruginosa.




  
PubMed:
        12899386


MedLine:
        




    
Source:
Chin Med Sci J. 1999 Mar;14(1):57-60.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12899386









           
Homologs By Global Alignment 

           

       



     
Gene ID:242
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
412
                           PA3790_tr
                           translation of PA3790
                           723
                           99.99
                           99.99
                           0
                           3844.0
     

     
     
22962
                           gb|AAG07177.1|AE004797_12
                           (AE004797) Putative copper transport outer membrane porin OprC precursor [Pseudomonas aeruginosa PAO1]
                           723
                           99.99
                           99.99
                           0
                           3844.0
     

     
     
22963
                           dbj|BAA05664.1|
                           (D28119) outer membrane protein C [Pseudomonas aeruginosa]
                           723
                           99.99
                           99.99
                           0
                           3844.0
     

     
     
22964
                           gb|AAN70407.1|AE016682_9
                           (AE016792) outer membrane copper receptor OprC [Pseudomonas putida KT2440]
                           727
                           70.15
                           78.81
                           43
                           2702.0
     

     
     
22965
                           gb|AAA25906.1|
                           (M60717) nosA [Pseudomonas stutzeri]
                           728
                           62.63
                           73.90
                           50
                           2378.0
     

     






      

          
GC ORFID: 43244How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3790Glimmer Score: 

          
Start: 3677330Stop: 3675159

          
Length: 2172


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3790 translation of PA3790Homolog Bit Score 1485.0

          
Other Homologs:  t_PA3790 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAAAACGTATGTCTACTCAACAACGAGCGGCCGGCAACGCCTGCCCGACCGCCGCTTTCAGCTTCGAC 
CCTGCCCGTCTCGCACAACGCCGCCGCTGGGCGGGAGCCTTCGCCGCACTGTGCGGCCTGGCCCTGTCTCCG 
TCGGCGCTCCTGGCCGAGGAGCACTCCCAGCACCAGGATCACGCCGTGGAGCTGGCGCCGAGCGTGGTCACC 
GGAGTCGCCCAGAGTTCGCCGCTGACCATCGTCACCAATCCCAAGGAGCCGCGCCAACCGGTACCGGCCAGC 
GATGGGGCCGACTACCTGAAGACCATTCCCGGCTTCGCGGTGATCCGCAACGGCGGCAGCAACGGCGACCCG 
GTGCTGCGCGGGATGTTCGGTTCGCGCCTGAACATCCTCACCAACGGCGGCATGATGCTCGGTGCCTGTCCG 
AACCGGATGGACGCGCCGACCTCCTACATCTCGCCGGAAACCTACGACAAGCTCACCGTGATCAAGGGCCCG 
CAGACGGTGCTCTGGGGGCCGGGCGCGTCGGCCGGGACGATCCTCTTCGAGCGTGAGCCGGAGCGCTTCGGC 
GAACTCGGCTCGCGGGTCAACGCCAGCCTGCTGGCCGGCTCCAATGGCCGCTTCGACAAGGTGCTGGACGCC 
GCCGCCGGCAACCGGCTCGGCTACCTGCGCTTCACCGGCAACCACGCGCAGTCCGACGATTACGAGGACGGC 
GCCGGGAATACCGTGCCGTCGCGCTGGAAGAAGTGGAACGGCGACGTCGCGGTCGGCTGGACCCCCGACGAG 
GACACCCTGATCGAACTCACCGCCGGCAAGGGCGACGGCGAGGCACGTTACGCCGGGCGCGGCATGGACGGC 
TCGCAGTTCAAGCGCGAGAGCCTGGGCCTGCGCTTCGTCAAATCGAACGTCAGCGATGTGCTGGAGAAGGTC 
GAGGCGCAGGTCTACTACAACTACGCCGACCACATCATGGACAACTTCCGCCTGCGCACTCCCGACCCGTCC 
AGCATGATGCCCATGCCGATGGCGTCCCAGGTGGACCGACGCACCCTCGGCGGTCGCCTGGCGGCCACCTGG 
CGCTGGGACGACTTCAAGCTGGTCACCGGGGTCGACGCCATGCGCAACGAGCACCGCGCGCGCGGCTCCAAG 
TACGACATGATGACCGACTACTACACCGACGCCGACCAGTTCCCCTGGAGCAAGGACGCGGTGTTCCACAAC 
TACGGGGCCTTCGGCGAACTGACCTGGTTCGCCGCCGAGCGCGACCGGCTGATCGGCGGGTTGCGCCTGGAC 
CGCGCCTCGGTCAAGGACTACCGGCAGACCCTGAAGTCCGGGCACATGGGCCACGCCATGGCCAACCCGACG 
GCCAACGACACCCGCGCCGATACCTTGCCCAGCGGCTTCGTGCGCTACGAGCATGACCTTGCCGACTCGCCG 
ACCACCCTCTACGCCGGCCTTGGCCATGCCGAGCGCTTCCCCGACTACTGGGAGCTGTTCTCGCCCAAGCGC 
GGGCCGAACGGGTCGGTCAACGCCTTCGACAAGATCAAGCCGGAAAAGACCACCCAGCTCGACTTCGGCCTC 
CAGTACAACGGCGACAAGCTGCAGGCCTGGGCCTCCGGCTACGTCGGGGTGGTCCAGGACTTCATCCTGTTC 
AGCTATCGCGAGGGCATGATGGGCTCCTCGACCCAGGCGACCAACGTCGACGCGCGGATCATGGGCGGCGAG 
CTGGGCGCTTCCTACCAGCTCACCGGCAACTGGAAGACCGACGCCAGCCTGGCCTATGCCTGGGGCAAGAAC 
AGCTCGGACGACCGCGCGCTGCCGCAGATCCCGCCGCTGGAAGCGCGCTTCGGCCTGACCTACGAGGAAGGC 
GACTGGAGTGCCGGCAGCCTGTGGCGGGTGGTCGCGCCGCAGAATCGTATCGCCAGGGACCAGGGCAACGTG 
GTCGGCAAGGACTTCGACAAGAGCGCCGGCTTCGGCGTCTTCTCGCTCAACGGCGCCTACCGGGTGACTCGC 
AACGTCAAGCTGAGCGCCGGTGTCGATAACCTGTTCGACAAGGATTACACCGAGCACCTGAACAAGGCCGGC 
GACGCCGGCTTCGGTTTCTCCGCCAACGAAACGGTTCCAGAGCCGGGCCGGACCTTCTGGACCAAGGTCGAC 
TTCAGCTTCTGA