ViewGene
Locus Name:
GeneID:
Location:

GeneID:2418
TrivialName: PA14_06240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06240
PAO1 Ortholog Locus:PA0477
Sequence Length:927
Protein Length:308
Start: 551942
Stop: 551016
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03866.1|AE004485_7 (AE004485) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 306/308 (99%), Positives = 307/308 (99%)
Sequence:
ATGCATCCCCTGCTGCGCCGTCTCGATCTCAACCTCCTGCTTGTCTTCGACGCCCTGTATCGCCACCGCAAC
GTCGGCACCGCAGCCAGCGAACTGGCGATCAGCGCCTCGGCCTTCAGCCATGCGCTGGGGCGTCTGCGCCAG
GGGCTGGACGACGAACTGTTCCTGCGCCAGGGCAATCGCATGCAGCCGACCCAGCGTGCCGAGCACCTGGCC
GCTGCGGTGGCCGCCGCCCTGCGCGCCCTCGGCGAGGGGCTGGAAGAGTGGCGGCCGTTCGTACCGGGACAG
AGCCAGCGTACCTTCGTCTTCGCCGCCACCGACTACACCGCCTTCGCCCTGCTTCCGCCGCTGATGAACCGC
CTGCAGCACAGCGCGCCCGGAGTGCGCCTGCGCCTGGTCAACGCGGAACGCAAGTTGTCGGTGGAGGCCCTG
GCCAGCGGGCGGATCGATTTCGCCCTCGGCTACGACGAGGAACACGAGCGCCTGCCCGAAGGCATCCAGGCC
CATGACTGGTTCGCCGACCGCTACGTGGTGGTAGCGCGGCGCGACCACCCGCGCCTCGCCGGGGCGCCGACG
CTGGAGGGCTACCTGGCCGAACGGCATGCGGTGGTGACGCCGTGGAACGAGGACAGTGGGGTGATCGACCGG
CTGCTGGCCCGCTCCGGCCTGCGTCGCGAAGTGGCGGTGCAACTGCCGACGGTGCTGGCGGCGCTGTTCCTG
GCAGGCTCCACCGATTTCCTGCTCACCGCTCCCCGACATGCCGCACAGGCACTGGCGGAAGCCGCCGGCCTC
GCCCTGTATCCCGCGCCGTTCGACATTCCGCCCTACGTGCTGCGGCTCTACAGCCACGTCCAGCATGTCGGG
CGTGATGCCCATGCGTGGATGATCGGGCAGTTGAAGGGCCTGGATATTTTCCGGACGGGCTGA
Translation:
MHPLLRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLA
AAVAAALRALGEGLEEWRPFVPGQSQRTFVFAATDYTAFALLPPLMNRLQHSAPGVRLRLVNAERKLSVEAL
ASGRIDFALGYDEEHERLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGYLAERHAVVTPWNEDSGVIDR
LLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAAQALAEAAGLALYPAPFDIPPYVLRLYSHVQHVG
RDAHAWMIGQLKGLDIFRTG*
AnnotationID:2426GeneID:2418
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:22
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA0477
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.0% aligned
Score =  103 bits (256), Expect = 3e-23
Identities = 76/293 (25%), Positives = 117/293 (39%), Gaps = 5/293 (1%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues,  97.6% aligned
Score = 80.8 bits (199), Expect = 2e-16
Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 4/207 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4839




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21985




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33778




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2418_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2418
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4070
                           PA0477_tr
                           translation of PA0477
                           308
                           99.35
                           99.67
                           0
                           1564.0
     

     
     
122042
                           gb|AAG03866.1|AE004485_7
                           (AE004485) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           308
                           99.35
                           99.67
                           0
                           1564.0
     

     
     
122043
                           gb|AAQ60821.1|
                           (AE016921) transcriptional regulator [Chromobacterium violaceum ATCC 12472]
                           317
                           54.57
                           66.87
                           14
                           836.0
     

     






      

          
GC ORFID: 45420How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0477Glimmer Score: 

          
Start: 6353284Stop: 6352358

          
Length: 927


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0477 translation of PA0477Homolog Bit Score 607.0

          
Other Homologs:  t_PA0477 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATCCCCTGCTGCGCCGTCTCGATCTCAACCTCCTGCTTGTCTTCGACGCCCTGTATCGCCACCGCAAC 
GTCGGCACCGCAGCCAGCGAACTGGCGATCAGCGCCTCGGCCTTCAGCCATGCGCTGGGGCGTCTGCGCCAG 
GGGCTGGACGACGAACTGTTCCTGCGCCAGGGCAATCGCATGCAGCCGACCCAGCGTGCCGAGCACCTGGCC 
GCTGCGGTGGCCGCCGCCCTGCGCGCCCTCGGCGAGGGGCTGGAAGAGTGGCGGCCGTTCGTACCGGGACAG 
AGCCAGCGTACCTTCGTCTTCGCCGCCACCGACTACACCGCCTTCGCCCTGCTTCCGCCGCTGATGAACCGC 
CTGCAGCACAGCGCGCCCGGAGTGCGCCTGCGCCTGGTCAACGCGGAACGCAAGTTGTCGGTGGAGGCCCTG 
GCCAGCGGGCGGATCGATTTCGCCCTCGGCTACGACGAGGAACACGAGCGCCTGCCCGAAGGCATCCAGGCC 
CATGACTGGTTCGCCGACCGCTACGTGGTGGTAGCGCGGCGCGACCACCCGCGCCTCGCCGGGGCGCCGACG 
CTGGAGGGCTACCTGGCCGAACGGCATGCGGTGGTGACGCCGTGGAACGAGGACAGTGGGGTGATCGACCGG 
CTGCTGGCCCGCTCCGGCCTGCGTCGCGAAGTGGCGGTGCAACTGCCGACGGTGCTGGCGGCGCTGTTCCTG 
GCAGGCTCCACCGATTTCCTGCTCACCGCTCCCCGACATGCCGCACAGGCACTGGCGGAAGCCGCCGGCCTC 
GCCCTGTATCCCGCGCCGTTCGACATTCCGCCCTACGTGCTGCGGCTCTACAGCCACGTCCAGCATGTCGGG 
CGTGATGCCCATGCGTGGATGATCGGGCAGTTGAAGGGCCTGGATATTTTCCGGACGGGCTGA