ViewGene
Locus Name:
GeneID:
Location:

GeneID:2415
TrivialName: PA14_14020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14020
PAO1 Ortholog Locus:PA3862
Sequence Length:948
Protein Length:315
Start: 1202849
Stop: 1201902
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07249.1|AE004803_5 (AE004803) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 312/315 (99%), Positives = 313/315 (99%)
Sequence:
ATGAGCGCCGCCACTCCCCTGATCGTCCAGCAGGCCGAAGCCGAGCAACTGCTCGCCCGTATCGACGTCCTC
CAGGCCATGCGCCAGCTGTTCCTCGACCTGGCCGCCGGCCAGGCGCTCCAGCCGGCCCAGCAACTGGTGGAG
TTCCCCGCCGGTCGCGGCGACTTCATCAACTACCTCGGCGTGCTCGCCCAGGAACAGGTCTACGGAGTCAAG
ACTTCACCCTACATCGTTCGCGAACAGGGCCCGTTGGTCACCGCCTGGACCCTGCTGATGTCGATGCAGACC
GGCCAGCCCTTGCTGCTCTGCGATGCCGCCCGGCTGACCACCGCGCGCACCGCCGCCACCACCGCGGTGGCG
GTGGATGCCCTGGCTCCGGCCGAAGCCGGCCGCCTGGCTCTGATCGGCAGCGGACCGGTGGCCCATGCCCAC
CTGCAATACGTGAAGGGCCTGCGTGACTGGCAGGGCGTGCGAGTCCATTCGCCGTGCCTGGACGAGCGCCGC
CTGCAAAGCCTGCGCGCCATCGACCCGCGCGCCGAAGCCGCCGGCAGTCTGGAGGAAGCGCTGGACGAAGCC
GATGTGATCCTGCTCTGCACCTCCTCGGCCCGAGCGGTGATCGACCCGCGCCAACTCGAGCGCCCGGCGCTG
GTCACCTCGATCAGCACCAACGCGCCCCGCGCCCATGAGGTACCGGCGGAAAGCCTGGCGGCCATGGACGTC
TATTGCGACTACCGGCACACCACCCCAGGCTCCGCCGGCGAGATGCTGATCGCCGCCGAACAGCATGGCTGG
AGCCCCGAGGCGATCCGCGGCGACCTCGCCGAGCTGCTCAGCGGCCAGGCGCCACGTCCGGAATACCGGCGC
CCGGCGTTCTTCCGCTCGATCGGCCTGGGCCTGGAAGACGTAGCTCTGGCCAACGCCCTCTACCGCCTGCGC
CAGGCAGGCTGA
Translation:
MSAATPLIVQQAEAEQLLARIDVLQAMRQLFLDLAAGQALQPAQQLVEFPAGRGDFINYLGVLAQEQVYGVK
TSPYIVREQGPLVTAWTLLMSMQTGQPLLLCDAARLTTARTAATTAVAVDALAPAEAGRLALIGSGPVAHAH
LQYVKGLRDWQGVRVHSPCLDERRLQSLRAIDPRAEAAGSLEEALDEADVILLCTSSARAVIDPRQLERPAL
VTSISTNAPRAHEVPAESLAAMDVYCDYRHTTPGSAGEMLIAAEQHGWSPEAIRGDLAELLSGQAPRPEYRR
PAFFRSIGLGLEDVALANALYRLRQAG*
AnnotationID:2423GeneID:2415
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 08:08:10
Gene Name:
Confidence Code:3
GeneProduct:putative ornithine cyclodeaminase
Cell Localization:()
Synonyms:PA3862
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2423,pfam02423
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO79993.1| (AE016947) ornithine cyclodeaminase, putative [Enterococcus
           faecalis V583]
          Length = 321

 Score =  111 bits (278), Expect = 5e-24
 Identities = 83/313 (26%), Positives = 152/313 (48%), Gaps = 10/313 (3%)








 
Structural Features:
COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog 
[Amino acid transport and metabolism]
CD-Length = 330 residues,  97.0% aligned
Score =  238 bits (609), Expect = 6e-64
Identities = 103/320 (32%), Positives = 152/320 (47%), Gaps = 8/320 (2%)

pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin family.
CD-Length = 313 residues,  97.8% aligned
Score =  112 bits (281), Expect = 6e-26
Identities = 79/313 (25%), Positives = 133/313 (42%), Gaps = 14/313 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4833




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21979




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38107




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2415_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2415
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4066
                           PA3862_tr
                           translation of PA3862
                           315
                           99.04
                           99.36
                           0
                           1564.0
     

     
     
121988
                           gb|AAG07249.1|AE004803_5
                           (AE004803) hypothetical protein PA3862 [Pseudomonas aeruginosa PAO1]
                           315
                           99.04
                           99.36
                           0
                           1564.0
     

     






      

          
GC ORFID: 45417How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3862Glimmer Score: 

          
Start: 3751089Stop: 3752036

          
Length: 948


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3862 translation of PA3862Homolog Bit Score 607.0

          
Other Homologs:  t_PA3862 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCGCCACTCCCCTGATCGTCCAGCAGGCCGAAGCCGAGCAACTGCTCGCCCGTATCGACGTCCTC 
CAGGCCATGCGCCAGCTGTTCCTCGACCTGGCCGCCGGCCAGGCGCTCCAGCCGGCCCAGCAACTGGTGGAG 
TTCCCCGCCGGTCGCGGCGACTTCATCAACTACCTCGGCGTGCTCGCCCAGGAACAGGTCTACGGAGTCAAG 
ACTTCACCCTACATCGTTCGCGAACAGGGCCCGTTGGTCACCGCCTGGACCCTGCTGATGTCGATGCAGACC 
GGCCAGCCCTTGCTGCTCTGCGATGCCGCCCGGCTGACCACCGCGCGCACCGCCGCCACCACCGCGGTGGCG 
GTGGATGCCCTGGCTCCGGCCGAAGCCGGCCGCCTGGCTCTGATCGGCAGCGGACCGGTGGCCCATGCCCAC 
CTGCAATACGTGAAGGGCCTGCGTGACTGGCAGGGCGTGCGAGTCCATTCGCCGTGCCTGGACGAGCGCCGC 
CTGCAAAGCCTGCGCGCCATCGACCCGCGCGCCGAAGCCGCCGGCAGTCTGGAGGAAGCGCTGGACGAAGCC 
GATGTGATCCTGCTCTGCACCTCCTCGGCCCGAGCGGTGATCGACCCGCGCCAACTCGAGCGCCCGGCGCTG 
GTCACCTCGATCAGCACCAACGCGCCCCGCGCCCATGAGGTACCGGCGGAAAGCCTGGCGGCCATGGACGTC 
TATTGCGACTACCGGCACACCACCCCAGGCTCCGCCGGCGAGATGCTGATCGCCGCCGAACAGCATGGCTGG 
AGCCCCGAGGCGATCCGCGGCGACCTCGCCGAGCTGCTCAGCGGCCAGGCGCCACGTCCGGAATACCGGCGC 
CCGGCGTTCTTCCGCTCGATCGGCCTGGGCCTGGAAGACGTAGCTCTGGCCAACGCCCTCTACCGCCTGCGC 
CAGGCAGGCTGA