ViewGene
Locus Name:
GeneID:
Location:

GeneID:2411
TrivialName: PA14_27770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27770
PAO1 Ortholog Locus:PA2812
Sequence Length:933
Protein Length:310
Start: 2407787
Stop: 2408719
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06200.1|AE004708_6 (AE004708) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 310/310 (100%), Positives = 310/310 (100%)
Sequence:
ATGAGTTCCGCCCTGTCCATCCGTCAATTGACGAAAACCTACGGCAACGGTTTCCAGGCCCTCAAGGGCATC
GACCTGGACGTCGCCGAAGGTGATTTCTTCGCCTTGCTCGGCCCCAACGGCGCGGGCAAGTCCACCACCATC
GGGATTCTATCGACCCTGGTGAACAAGACCAGCGGTTCGGTCTCGGTGTTCGGCCACGACCTCGACAAGGAC
CCGGCCGGCCTCAAGCGTTGCCTTGGCGTGGTGCCGCAGGAGTTCAACTTCAACCAGTTCGAGAAGGTCTTC
GACATCGTCGTGACCCAGGCCGGCTACTACGGCATCCCGGCGAAGATCGCCAAGGAGCGCGCCGAGCGCTAC
CTGACCCAGCTGGGGCTGTGGGACAAGCGCAACGAAGCCTCGCGGATGCTCTCCGGCGGCATGAAGCGACGC
CTGATGATCGCCCGCGCGCTGGTCCACCAGCCGCGCCTGCTGATCCTCGACGAGCCCACCGCCGGGGTCGAC
ATCGAGTTGCGCCGTTCGATGTGGAGCTTCCTCACCGAACTCAACCAGGAAGGCATCAGCATCATCCTCACC
ACCCACTATCTGGAAGAGGCGGAGCAGCTCTGCCGCAACATCGCCATCATCGACCACGGCGAGATCGTGCAG
AACACCAGCATGCGCGACCTGCTGATGACCCTGCATTCGGAAACCTTCCTGCTCGACCTGAAGAACGTCCAG
GCCCTGCCGCCGACCCTCGACGGCTATCCGACGCGGCTGGTCGACGACCACACTCTCGAAGTGCAGGTGGAG
AAGAGCCAGGGCATCAACGACCTGTTCGCCCAACTGGGTGCACAAGGCATCGAGGTACTGAGCCTGCGCAAC
AAGACCAATCGCCTGGAGGAGCTGTTCGTGTCGCTGGTGGAGAAGAACCTGACGAGGATCGCCCGATGA
Translation:
MSSALSIRQLTKTYGNGFQALKGIDLDVAEGDFFALLGPNGAGKSTTIGILSTLVNKTSGSVSVFGHDLDKD
PAGLKRCLGVVPQEFNFNQFEKVFDIVVTQAGYYGIPAKIAKERAERYLTQLGLWDKRNEASRMLSGGMKRR
LMIARALVHQPRLLILDEPTAGVDIELRRSMWSFLTELNQEGISIILTTHYLEEAEQLCRNIAIIDHGEIVQ
NTSMRDLLMTLHSETFLLDLKNVQALPPTLDGYPTRLVDDHTLEVQVEKSQGINDLFAQLGAQGIEVLSLRN
KTNRLEELFVSLVEKNLTRIAR*
AnnotationID:2419GeneID:2411
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 10:10:26
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:yadG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1131,COG4555,cd00267
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67514.1|AE016380_2 (AE016781) ABC transporter, ATP-binding protein [Pseudomonas putida
           KT2440]
          Length = 310

 Score =  512 bits (1318), Expect = e-144
 Identities = 260/309 (84%), Positives = 278/309 (89%)

>gb|AAO57322.1| (AE016869) ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 310

 Score =  504 bits (1299), Expect = e-142
 Identities = 254/309 (82%), Positives = 279/309 (90%)

>gb|AAC73238.1| (AE000122) putative ATP-binding component of a transport system
           [Escherichia coli K12]
          Length = 308

 Score =  412 bits (1059), Expect = e-114
 Identities = 214/303 (70%), Positives = 244/303 (80%), Gaps = 1/303 (0%)








 
Structural Features:
COG1131, CcmA, ABC-type multidrug transport system, ATPase component 
[Defense mechanisms]
CD-Length = 293 residues, 100.0% aligned
Score =  278 bits (711), Expect = 8e-76
Identities = 116/304 (38%), Positives = 174/304 (57%), Gaps = 12/304 (3%)

COG4555, NatA, ABC-type Na+ transport system, ATPase component 
[Energy production and conversion / Inorganic ion transport and metabolism]
CD-Length = 245 residues,  89.8% aligned
Score =  160 bits (407), Expect = 2e-40
Identities = 77/220 (35%), Positives = 125/220 (56%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter 
nucleotide-binding domain
CD-Length = 217 residues,  98.2% aligned
Score =  170 bits (433), Expect = 2e-43
Identities = 74/214 (34%), Positives = 125/214 (58%), Gaps = 3/214 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4825




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21971




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36233




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2411_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2411
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4062
                           PA2812_tr
                           translation of PA2812
                           310
                           99.99
                           99.99
                           0
                           1564.0
     

     
     
121838
                           gb|AAG06200.1|AE004708_6
                           (AE004708) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           310
                           99.99
                           99.99
                           0
                           1564.0
     

     
     
121839
                           gb|AAN67514.1|AE016380_2
                           (AE016781) ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           310
                           83.87
                           89.67
                           0
                           1315.0
     

     
     
121840
                           gb|AAO57322.1|
                           (AE016869) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           310
                           81.93
                           90.00
                           0
                           1297.0
     

     
     
121841
                           gb|AAN78650.1|AE016755_150
                           (AE016755) Hypothetical ABC transporter ATP-binding protein yadG [Escherichia coli CFT073]
                           311
                           69.77
                           79.09
                           4
                           1059.0
     

     






      

          
GC ORFID: 45413How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2812Glimmer Score: 

          
Start: 2546139Stop: 2545207

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2812 translation of PA2812Homolog Bit Score 607.0

          
Other Homologs:  t_PA2812 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTCCGCCCTGTCCATCCGTCAATTGACGAAAACCTACGGCAACGGTTTCCAGGCCCTCAAGGGCATC 
GACCTGGACGTCGCCGAAGGTGATTTCTTCGCCTTGCTCGGCCCCAACGGCGCGGGCAAGTCCACCACCATC 
GGGATTCTATCGACCCTGGTGAACAAGACCAGCGGTTCGGTCTCGGTGTTCGGCCACGACCTCGACAAGGAC 
CCGGCCGGCCTCAAGCGTTGCCTTGGCGTGGTGCCGCAGGAGTTCAACTTCAACCAGTTCGAGAAGGTCTTC 
GACATCGTCGTGACCCAGGCCGGCTACTACGGCATCCCGGCGAAGATCGCCAAGGAGCGCGCCGAGCGCTAC 
CTGACCCAGCTGGGGCTGTGGGACAAGCGCAACGAAGCCTCGCGGATGCTCTCCGGCGGCATGAAGCGACGC 
CTGATGATCGCCCGCGCGCTGGTCCACCAGCCGCGCCTGCTGATCCTCGACGAGCCCACCGCCGGGGTCGAC 
ATCGAGTTGCGCCGTTCGATGTGGAGCTTCCTCACCGAACTCAACCAGGAAGGCATCAGCATCATCCTCACC 
ACCCACTATCTGGAAGAGGCGGAGCAGCTCTGCCGCAACATCGCCATCATCGACCACGGCGAGATCGTGCAG 
AACACCAGCATGCGCGACCTGCTGATGACCCTGCATTCGGAAACCTTCCTGCTCGACCTGAAGAACGTCCAG 
GCCCTGCCGCCGACCCTCGACGGCTATCCGACGCGGCTGGTCGACGACCACACTCTCGAAGTGCAGGTGGAG 
AAGAGCCAGGGCATCAACGACCTGTTCGCCCAACTGGGTGCACAAGGCATCGAGGTACTGAGCCTGCGCAAC 
AAGACCAATCGCCTGGAGGAGCTGTTCGTGTCGCTGGTGGAGAAGAACCTGACGAGGATCGCCCGATGA