ViewGene

Locus Name:
GeneID:
Location:

GeneID:2410
TrivialName: PA14_34450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34450
PAO1 Ortholog Locus:PA2332
Sequence Length:906
Protein Length:301
Start: 3064684
Stop: 3063779
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05720.1|AE004659_6 (AE004659) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 301/301 (100%), Positives = 301/301 (100%)
Sequence:
ATGAATTCGTCCAACCCGCTTGTCGATTGGTTATTAGACAGCCTCGAAGTCGACACCAGCCTGTTCCATGTC
GGTCGCTACTGCGGCGGCTGGCATGCCTCCACCCACGGCCTGGCGCGTGCCAGCTTCCACCTGGTGGTGCAG
GGACACTGCTGGGCGCACGTCGCCGGAAGCGCCCGGGGCTGGCGACTGGACAGCGGCGACGCGCTGTTCTTC
CTGCGCGACGTCGAGTTCCGCCTGTCCAGCGAGGCCACCGCCGAGGCCGCGCGCTGCCAGCCGCGCGGCGAA
ATGCAGGCGCTGGAGTGGAACGCGGCGGACGGTGCCGGCCTGGTCTGCGGGTTCTTCCACTTCCATTCGGGA
TTGTCCGGGCTGATCGTCGACGCCCTGCCCGACTGGCTGATCCTGCGCGCCGGCGATCCGGCGCTGGACGCG
GCGCGACGCCTGTTCGCCCTGATCGTCGACGAGTGCCGCCGCCAGCCGGCGCCGTCGCCGGTTCTGCTGGAG
CGCCTCAGCCACCTGCTGTTCCTCTACGTGTTGCGCCAGCAGGTGCTCGACAACCCGACCCTCGGCGGCCTG
GTGGCACTGGCCCGCCAGCCGCAGTTCGCCGGCCTGCTGGAAGCGCTGATCGAGGCACCCGAACAGCCCTGG
AGCCTGGAACAGATGGCCGAACGCACCGGACTCTCGCGCTCGGCCTTCTTCAAGCGCTTCAACGAACTCAGC
GGTCAGTCGCCGGGACAGGTCCTGCTGGCCCTGCGCATGCACCGCGCCTGCGCCCTGCTGCGCGCCGACGCC
AGCGTCGCCGAGGTCGCGGCGGCGGTCGGCTACCAGTCCACCGCCGCCTTCACCCGTGCCTTCCACAAGGCC
ACCGGGCAGCAGCCGGGGGCCTATCGCAAGGCCAGCCGCTGA
Translation:
MNSSNPLVDWLLDSLEVDTSLFHVGRYCGGWHASTHGLARASFHLVVQGHCWAHVAGSARGWRLDSGDALFF
LRDVEFRLSSEATAEAARCQPRGEMQALEWNAADGAGLVCGFFHFHSGLSGLIVDALPDWLILRAGDPALDA
ARRLFALIVDECRRQPAPSPVLLERLSHLLFLYVLRQQVLDNPTLGGLVALARQPQFAGLLEALIEAPEQPW
SLEQMAERTGLSRSAFFKRFNELSGQSPGQVLLALRMHRACALLRADASVAEVAAAVGYQSTAAFTRAFHKA
TGQQPGAYRKASR*
AnnotationID:2418GeneID:2410
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 15:03:06
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA2332
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2207,smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69240.1|AE016558_10 (AE016787) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 306

 Score =  404 bits (1037), Expect = e-112
 Identities = 204/298 (68%), Positives = 233/298 (78%)

Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins 
[Transcription]
CD-Length = 127 residues,  93.7% aligned
Score = 93.8 bits (232), Expect = 3e-20
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 86.0 bits (213), Expect = 6e-18
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Genomic Context:
Comment:
ReferenceID:4823
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21969
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32464
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2410_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2410

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4061 PA2332_tr translation of PA2332 301 99.99 99.99 0 1566.0
121836 gb|AAG05720.1|AE004659_6 (AE004659) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 301 99.99 99.99 0 1566.0
121837 gb|AAN69240.1|AE016558_10 (AE016787) transcriptional regulator, AraC family [Pseudomonas putida KT2440] 306 66.66 76.14 5 1033.0
GC ORFID: 45412How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2332Glimmer Score:
Start: 1889232Stop: 1890137
Length: 906
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2332 translation of PA2332Homolog Bit Score 607.0
Other Homologs: t_PA2332 (ORF: GLIMMER)
GC ORF Sequence
ATGAATTCGTCCAACCCGCTTGTCGATTGGTTATTAGACAGCCTCGAAGTCGACACCAGCCTGTTCCATGTC
GGTCGCTACTGCGGCGGCTGGCATGCCTCCACCCACGGCCTGGCGCGTGCCAGCTTCCACCTGGTGGTGCAG
GGACACTGCTGGGCGCACGTCGCCGGAAGCGCCCGGGGCTGGCGACTGGACAGCGGCGACGCGCTGTTCTTC
CTGCGCGACGTCGAGTTCCGCCTGTCCAGCGAGGCCACCGCCGAGGCCGCGCGCTGCCAGCCGCGCGGCGAA
ATGCAGGCGCTGGAGTGGAACGCGGCGGACGGTGCCGGCCTGGTCTGCGGGTTCTTCCACTTCCATTCGGGA
TTGTCCGGGCTGATCGTCGACGCCCTGCCCGACTGGCTGATCCTGCGCGCCGGCGATCCGGCGCTGGACGCG
GCGCGACGCCTGTTCGCCCTGATCGTCGACGAGTGCCGCCGCCAGCCGGCGCCGTCGCCGGTTCTGCTGGAG
CGCCTCAGCCACCTGCTGTTCCTCTACGTGTTGCGCCAGCAGGTGCTCGACAACCCGACCCTCGGCGGCCTG
GTGGCACTGGCCCGCCAGCCGCAGTTCGCCGGCCTGCTGGAAGCGCTGATCGAGGCACCCGAACAGCCCTGG
AGCCTGGAACAGATGGCCGAACGCACCGGACTCTCGCGCTCGGCCTTCTTCAAGCGCTTCAACGAACTCAGC
GGTCAGTCGCCGGGACAGGTCCTGCTGGCCCTGCGCATGCACCGCGCCTGCGCCCTGCTGCGCGCCGACGCC
AGCGTCGCCGAGGTCGCGGCGGCGGTCGGCTACCAGTCCACCGCCGCCTTCACCCGTGCCTTCCACAAGGCC
ACCGGGCAGCAGCCGGGGGCCTATCGCAAGGCCAGCCGCTGA