ViewGene
Locus Name:
GeneID:
Location:

GeneID:241
TrivialName: PA14_18920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18920
PAO1 Ortholog Locus:PA3491
Sequence Length:2325
Protein Length:774
Start: 1633213
Stop: 1630889
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06879.1|AE004770_4 (AE004770) probable ferredoxin [Pseudomonas aeruginosa PAO1]
Identities = 765/774 (98%), Positives = 768/774 (99%)
Sequence:
ATGAGCGCCCTGCACGCCTTCCCCGGTGGCCTCTGCCTGCCGGCCAACAAGGAGCGCTCCACCGCCCTGCCG
ATCCAGCAGGCGCCGCTGGCGCAGCGCTACATCGTGCCGCTCGGCCAGCACATGGGCGCGCCGGCGCGGCCT
TGCGTGGAAGTCGGCCAGGCCGTGCTCAAAGGCCAGACCATCGCCCTCCCGGACGGCACCGTCAGCGCCGCG
CTGCATGCCCCGACCTCGGGGACCGTGGTGGCGATCGGCGCACACCCCTATCCGCATGCCTCCGGTCTTCCC
GCGCCGGCCATCgTCATCGCCAGCGACGGcCTGGAGCGCTGGACCGAGCTGCATCCCTGCCCGGACTTCCGC
GCCGAAAGCCCGCTGGCGCTGCTCGAACGTATCCGCGCGGCCGGCATCGGCGGtCTCGGCGGCGCCGGCTTC
CCCACCGCCGCCAAGCTCGCCGCGCGCCCGGCGGACAAGATCCATACGCTGGTGGTGAACGGCGCCGAATGC
GAGCCCTACATCAGCGCCGACGACCTGCTCATGCGCGAGCGCGCCACGCAGGTGCTGAGCGGCATCGATATC
CTGGTGCAGATCCTGCGCCCCGAAGAGGTGCTGGTCGGCATCGAGGACGACAAGCCGGAAGCCATCGCCGCC
CTCGGCGCCGCCCTCGGTGAACGGCCCTATCGCATCGTCGCCCTGCCGACCCGCTATCCCTCGGGCGGCGAG
CGCCAGCTGATCCAGTTGCTCACCGGCAGGGAAGTCCCCGCGGACGGCCTGCCGGCGGACATCGGCATCCTG
TGCCAGAACGTCGGCACCCTGGCCGCCGTGCACGATGCCGTCGTCCTCGGTCGGCCGCTGATCTCGCGGATC
ACCACCCTCGCCGGCGGCGCCCTGGAGCGGCCGATGAACGTCGAGGCGCTGATCGGCACGCCGGTGCACGAG
CTGCTGGCGTTCGCCGGCCTCGCCGAGGGACGCCTGGAACGCGTGCTGATGGGCGGGCCGATGATGGGCTTC
GCCCTGCCCGATCTCTCGGTGCCGCTGATCAAGACCTGCAACTGCCTGCTCGCCGGCGATGCCACGGAGCTG
CCGGAACCAGTGCCGGCCATGCCCTGTATCCGCTGCGGCGACTGCGCCCGGGTCTGCCCCGTCAGCCTGCTG
CCACAACAACTGCATTTCTTCGCCCTGGGCGACGAGCACGAGCAATTGCTCGCCCACAACCTGTTCGATTGC
ATCGAATGCGGCGCCTGCGCCTACGTCTGCCCGTCGAGCATTCCCTTGGTGCAGTACTACCGCGCGTCCAAG
GCGGAAATCCGCGAGCAGCGGCAGAAGCTGCTGAAGGCCGAACAGTCCCGCGAGCGTTTCGAGCAACGCCAG
GCTCGCCTGCGCCGCGACGAGGAACGCCGGGCCGCAGAACGCGCCCAACGCGCCGAGAAGGCCGCGCGGGCG
CGCGCCGCCCAGACCGAGCGCGAGGAAGCCGCCCCCGCCACGGCGGTCGACCCGGTGCAGGCGGCGATCGAG
CGGGCCAGGGCGCGCAAGCAGGCCGGTAGCGGCAGCGAACGGCTGAAACGGCTGAAGATCGAAGCGAGCATG
GCGCGGGTGGCGCTGAAGAAGGCCGAGAAACAGTTGCTCAGCCACGACACCCCGGAACAGCATGGCCTGGTC
GCGGAACTGCGCGCCGCCGCCGAGGCCGCCGACAAGGCCCTGGCCGATGCCGAAGCCAGCCTGCCGCGCGAC
CTACCCAGCGCACCGCCTGCCGCGCTCGACGACGAAGCCGAACTGAAGAAGGCCAAGGCCCAGGCCGCCATG
GCCCGCGCCCAGCTCAAGCGCTCGGAAAAGGCCTTCGGCGAAGCGCCCGGCGCCGAACAGCGGGCGACCCTC
GACGAACTGCGCGCCGAGGTCGAGCGTTGCGAAGCCACCCTGGCCCGCCTCGAGCGTCACGCGCCGAAGCCC
GCGGCGCCCGGCGACGACGGCCAGGCGGCGCTGAAGCGGGCGAAGATCGCCCTGGTCGGCAAGCGCGCGGCC
TTGAAGAAGGCCGAGCAGGCCGGGGTGATGGACAGCGAGCTGGAACGCCTGCGCGGCGAGCTGCAAGCCGCC
GAGCGCGACCTGCATGCCGCCGAGGACGCCTGCGGCAAGCCGGCGCCGGAGCTGGTGCGGATCGACAAGCGC
CCGGTCGACCCGCGCACCCGCGAGCTGAAGACCGAGCTGGCCTACGCCCGCGCCGCCCTGAAGAAGCTCGAA
CGCCTGGCGAACGCCGACCCCGCCGCACTCGCCGCCGCCCGCGCGCGCCTGAGCGCCGCCGAGCGCGCCCTG
ACCGAACACGGTACGGAGTGA
Translation:
MSALHAFPGGLCLPANKERSTALPIQQAPLAQRYIVPLGQHMGAPARPCVEVGQAVLKGQTIALPDGTVSAA
LHAPTSGTVVAIGAHPYPHASGLPAPAIVIASDGLERWTELHPCPDFRAESPLALLERIRAAGIGGLGGAGF
PTAAKLAARPADKIHTLVVNGAECEPYISADDLLMRERATQVLSGIDILVQILRPEEVLVGIEDDKPEAIAA
LGAALGERPYRIVALPTRYPSGGERQLIQLLTGREVPADGLPADIGILCQNVGTLAAVHDAVVLGRPLISRI
TTLAGGALERPMNVEALIGTPVHELLAFAGLAEGRLERVLMGGPMMGFALPDLSVPLIKTCNCLLAGDATEL
PEPVPAMPCIRCGDCARVCPVSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCPSSIPLVQYYRASK
AEIREQRQKLLKAEQSRERFEQRQARLRRDEERRAAERAQRAEKAARARAAQTEREEAAPATAVDPVQAAIE
RARARKQAGSGSERLKRLKIEASMARVALKKAEKQLLSHDTPEQHGLVAELRAAAEAADKALADAEASLPRD
LPSAPPAALDDEAELKKAKAQAAMARAQLKRSEKAFGEAPGAEQRATLDELRAEVERCEATLARLERHAPKP
AAPGDDGQAALKRAKIALVGKRAALKKAEQAGVMDSELERLRGELQAAERDLHAAEDACGKPAPELVRIDKR
PVDPRTRELKTELAYARAALKKLERLANADPAALAAARARLSAAERALTEHGTE*
AnnotationID:251GeneID:241
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 12:12:07
Gene Name:
Confidence Code:3
GeneProduct:putative NADH:ubiquinone oxidoreductase, subunit RnfC
Cell Localization:()
Synonyms:rnfC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative electron transport complex protein rnfC
Functional Category Confidence Code:5
COGs:pfam01512,COG4656
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO11418.1|AE016807_137 (AE016807) RnfC-related protein [Vibrio vulnificus CMCP6]
          Length = 919

 Score =  511 bits (1315), Expect = e-144
 Identities = 332/834 (39%), Positives = 466/834 (55%), Gaps = 79/834 (9%)

>gb|AAN80481.1|AE016761_56 (AE016761) Electron transport complex protein rnfC [Escherichia
           coli CFT073]
          Length = 742

 Score =  501 bits (1289), Expect = e-141
 Identities = 309/742 (41%), Positives = 424/742 (57%), Gaps = 78/742 (10%)

>emb|CAD01910.1| (AL627271) putative NADH reducing dehydrogenase [Salmonella
           enterica subsp. enterica serovar Typhi]
          Length = 673

 Score =  494 bits (1272), Expect = e-139
 Identities = 292/676 (43%), Positives = 394/676 (58%), Gaps = 36/676 (5%)









 
Structural Features:
pfam01512, Complex1_51K, Respiratory-chain NADH dehydrogenase 51 Kd subunit.
CD-Length = 262 residues,  98.5% aligned
Score =  147 bits (373), Expect = 4e-36
Identities = 75/258 (29%), Positives = 101/258 (39%), Gaps = 39/258 (15%)

COG4656, RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit RnfC 
[Energy production and conversion]
CD-Length = 529 residues,  99.6% aligned
Score =  611 bits (1577), Expect = 9e-176
Identities = 292/559 (52%), Positives = 366/559 (65%), Gaps = 33/559 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:485




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17627




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32053




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:241_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:241
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
411
                           PA3491_tr
                           translation of PA3491
                           774
                           98.83
                           99.22
                           0
                           3848.0
     

     
     
22940
                           gb|AAG06879.1|AE004770_4
                           (AE004770) probable ferredoxin [Pseudomonas aeruginosa PAO1]
                           774
                           98.83
                           99.22
                           0
                           3848.0
     

     
     
22941
                           gb|AAL20379.1|
                           (AE008763) putative respiratory-chain NADH dehydrogenase [Salmonella typhimurium LT2]
                           802
                           39.90
                           53.99
                           95
                           1351.0
     

     
     
22950
                           emb|CAD01910.1|
                           (AL627271) putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi]
                           797
                           39.64
                           52.57
                           147
                           1322.0
     

     
     
22949
                           gb|AAO68975.1|
                           (AE016838) putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           797
                           39.64
                           52.57
                           147
                           1322.0
     

     






      

          
GC ORFID: 43243How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3491Glimmer Score: 

          
Start: 3320721Stop: 3323045

          
Length: 2325


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3491 translation of PA3491Homolog Bit Score 1486.0

          
Other Homologs:  t_PA3491 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCCTGCACGCCTTCCCCGGTGGCCTCTGCCTGCCGGCCAACAAGGAGCGCTCCACCGCCCTGCCG 
ATCCAGCAGGCGCCGCTGGCGCAGCGCTACATCGTGCCGCTCGGCCAGCACATGGGCGCGCCGGCGCGGCCT 
TGCGTGGAAGTCGGCCAGGCCGTGCTCAAAGGCCAGACCATCGCCCTCCCGGACGGCACCGTCAGCGCCGCG 
CTGCATGCCCCGACCTCGGGGACCGTGGTGGCGATCGGCGCACACCCCTATCCGCATGCCTCCGGTCTTCCC 
GCGCCGGCCATCgTCATCGCCAGCGACGGcCTGGAGCGCTGGACCGAGCTGCATCCCTGCCCGGACTTCCGC 
GCCGAAAGCCCGCTGGCGCTGCTCGAACGTATCCGCGCGGCCGGCATCGGCGGtCTCGGCGGCGCCGGCTTC 
CCCACCGCCGCCAAGCTCGCCGCGCGCCCGGCGGACAAGATCCATACGCTGGTGGTGAACGGCGCCGAATGC 
GAGCCCTACATCAGCGCCGACGACCTGCTCATGCGCGAGCGCGCCACGCAGGTGCTGAGCGGCATCGATATC 
CTGGTGCAGATCCTGCGCCCCGAAGAGGTGCTGGTCGGCATCGAGGACGACAAGCCGGAAGCCATCGCCGCC 
CTCGGCGCCGCCCTCGGTGAACGGCCCTATCGCATCGTCGCCCTGCCGACCCGCTATCCCTCGGGCGGCGAG 
CGCCAGCTGATCCAGTTGCTCACCGGCAGGGAAGTCCCCGCGGACGGCCTGCCGGCGGACATCGGCATCCTG 
TGCCAGAACGTCGGCACCCTGGCCGCCGTGCACGATGCCGTCGTCCTCGGTCGGCCGCTGATCTCGCGGATC 
ACCACCCTCGCCGGCGGCGCCCTGGAGCGGCCGATGAACGTCGAGGCGCTGATCGGCACGCCGGTGCACGAG 
CTGCTGGCGTTCGCCGGCCTCGCCGAGGGACGCCTGGAACGCGTGCTGATGGGCGGGCCGATGATGGGCTTC 
GCCCTGCCCGATCTCTCGGTGCCGCTGATCAAGACCTGCAACTGCCTGCTCGCCGGCGATGCCACGGAGCTG 
CCGGAACCAGTGCCGGCCATGCCCTGTATCCGCTGCGGCGACTGCGCCCGGGTCTGCCCCGTCAGCCTGCTG 
CCACAACAACTGCATTTCTTCGCCCTGGGCGACGAGCACGAGCAATTGCTCGCCCACAACCTGTTCGATTGC 
ATCGAATGCGGCGCCTGCGCCTACGTCTGCCCGTCGAGCATTCCCTTGGTGCAGTACTACCGCGCGTCCAAG 
GCGGAAATCCGCGAGCAGCGGCAGAAGCTGCTGAAGGCCGAACAGTCCCGCGAGCGTTTCGAGCAACGCCAG 
GCTCGCCTGCGCCGCGACGAGGAACGCCGGGCCGCAGAACGCGCCCAACGCGCCGAGAAGGCCGCGCGGGCG 
CGCGCCGCCCAGACCGAGCGCGAGGAAGCCGCCCCCGCCACGGCGGTCGACCCGGTGCAGGCGGCGATCGAG 
CGGGCCAGGGCGCGCAAGCAGGCCGGTAGCGGCAGCGAACGGCTGAAACGGCTGAAGATCGAAGCGAGCATG 
GCGCGGGTGGCGCTGAAGAAGGCCGAGAAACAGTTGCTCAGCCACGACACCCCGGAACAGCATGGCCTGGTC 
GCGGAACTGCGCGCCGCCGCCGAGGCCGCCGACAAGGCCCTGGCCGATGCCGAAGCCAGCCTGCCGCGCGAC 
CTACCCAGCGCACCGCCTGCCGCGCTCGACGACGAAGCCGAACTGAAGAAGGCCAAGGCCCAGGCCGCCATG 
GCCCGCGCCCAGCTCAAGCGCTCGGAAAAGGCCTTCGGCGAAGCGCCCGGCGCCGAACAGCGGGCGACCCTC 
GACGAACTGCGCGCCGAGGTCGAGCGTTGCGAAGCCACCCTGGCCCGCCTCGAGCGTCACGCGCCGAAGCCC 
GCGGCGCCCGGCGACGACGGCCAGGCGGCGCTGAAGCGGGCGAAGATCGCCCTGGTCGGCAAGCGCGCGGCC 
TTGAAGAAGGCCGAGCAGGCCGGGGTGATGGACAGCGAGCTGGAACGCCTGCGCGGCGAGCTGCAAGCCGCC 
GAGCGCGACCTGCATGCCGCCGAGGACGCCTGCGGCAAGCCGGCGCCGGAGCTGGTGCGGATCGACAAGCGC 
CCGGTCGACCCGCGCACCCGCGAGCTGAAGACCGAGCTGGCCTACGCCCGCGCCGCCCTGAAGAAGCTCGAA 
CGCCTGGCGAACGCCGACCCCGCCGCACTCGCCGCCGCCCGCGCGCGCCTGAGCGCCGCCGAGCGCGCCCTG 
ACCGAACACGGTACGGAGTGA