ViewGene
Locus Name:
GeneID:
Location:

GeneID:2409
TrivialName: PA14_35420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35420
PAO1 Ortholog Locus:PA2255
Sequence Length:876
Protein Length:291
Start: 3149791
Stop: 3148916
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05643.1|AE004651_5 (AE004651) pyoverdine biosynthesis protein PvcB [Pseudomonas aeruginosa PAO1]
Identities = 289/291 (99%), Positives = 290/291 (99%)
Sequence:
ATGAACGCCTATCTCAGCGATCAACCGGTACGTCTCTCGCCGCTGCGCGACGAACAGGGCAACCAGCCGCGC
TTCGGCCTGCTGCTGGAGCCCGGCCGCCCCGGCATGCACGTCGGCGAGCTGCCGGCGCAGTGGCTCAAGGGC
CTGGCGCGCAGCCACCACCTGCTGCTCCTGCGCGGCTTCGCCGCCTTCGCCGACGCCGAGAGCCTGACCCGC
TACTGCCACGACTTCGGCGAAGTGATGCTGTGGCCGTTCGGCGCGGTGCTCGAGCTGGTGGAACAGGAGGGC
GCCGAGGACCACATCTTCGCCAACAACTACGTGCCGCTGCACTGGGACGGCATGTACCTGGAGACGGTGCCG
GAATTCCAGCTGTTCCACTGTGTCGACGCGCCCGGCGACAGCGACGGCGGCCGCACCACCTTCAGCTCGACC
CCGGCGGCGCTGCAACTGGCCGACAGTAGCGAGCTGGAACTCTGGCGCCGCGCCAGCGGCCGGTACCAGCGC
AGCGCGGCGCACTACAGCAGCCGCTCGGCGGCACCGATAGTCGAGCGCCACCCGCGCCGAGAATTCCCCATC
CTGCGTTTCTGCGAACCGCCGGTCGAGGGCGACGCCAGCTTCATCAACCCCTCCGAGTTCCACTACGACGGC
ATCGCCCCGGAACAGCGCGGCGAACTGCTCGCCAGCCTGCGCCGCTGCCTGTACCACCCACAGGCGCACTAC
GCCCACCGCTGGCGCAGCGACGACCTGGTGATCGCCGACAACCTGACCCTGCTGCACGGTCGCGAGGCCTTC
GTCCACCGCGCGCCGCGCCACCTGCGGCGGGTGCATATCCACGCCGAGCCGGCGCTGCGCAACCCGCACCTG
CAGCGCGACTGA
Translation:
MNAYLSDQPVRLSPLRDEQGNQPRFGLLLEPGRPGMHVGELPAQWLKGLARSHHLLLLRGFAAFADAESLTR
YCHDFGEVMLWPFGAVLELVEQEGAEDHIFANNYVPLHWDGMYLETVPEFQLFHCVDAPGDSDGGRTTFSST
PAALQLADSSELELWRRASGRYQRSAAHYSSRSAAPIVERHPRREFPILRFCEPPVEGDASFINPSEFHYDG
IAPEQRGELLASLRRCLYHPQAHYAHRWRSDDLVIADNLTLLHGREAFVHRAPRHLRRVHIHAEPALRNPHL
QRD*
AnnotationID:2417GeneID:2409
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 16:04:01
Gene Name:pvcB
Confidence Code:1
GeneProduct:pyoverdine biosynthesis protein PvcB
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2175
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Pyoverdine synthesis
Homology:






 
Structural Features:






   
Genomic Context:
Second of four ORF cluster.






   
Comment:


















    ReferenceID:4821




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17021




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA2255_CDS.cgi


    		




 
URL:

















    ReferenceID:21967




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2409
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4060
                           PA2255_tr
                           translation of PA2255
                           291
                           99.31
                           99.65
                           0
                           1566.0
     

     
     
121832
                           gb|AAG05643.1|AE004651_5
                           (AE004651) pyoverdine biosynthesis protein PvcB [Pseudomonas aeruginosa PAO1]
                           291
                           99.31
                           99.65
                           0
                           1566.0
     

     
     
121833
                           gb|AAC21672.1|
                           (AF002222) PvcB [Pseudomonas aeruginosa]
                           291
                           98.62
                           99.31
                           0
                           1557.0
     

     
     
121834
                           gb|AAF95092.1|
                           (AE004270) PvcB protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           296
                           45.27
                           60.81
                           14
                           695.0
     

     
     
121835
                           emb|CAE15191.1|
                           (BX571868) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           296
                           40.54
                           57.77
                           20
                           634.0
     

     






      

          
GC ORFID: 45411How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2255Glimmer Score: 

          
Start: 1804125Stop: 1805000

          
Length: 876


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2255 translation of PA2255Homolog Bit Score 607.0

          
Other Homologs:  t_PA2255 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCTATCTCAGCGATCAACCGGTACGTCTCTCGCCGCTGCGCGACGAACAGGGCAACCAGCCGCGC 
TTCGGCCTGCTGCTGGAGCCCGGCCGCCCCGGCATGCACGTCGGCGAGCTGCCGGCGCAGTGGCTCAAGGGC 
CTGGCGCGCAGCCACCACCTGCTGCTCCTGCGCGGCTTCGCCGCCTTCGCCGACGCCGAGAGCCTGACCCGC 
TACTGCCACGACTTCGGCGAAGTGATGCTGTGGCCGTTCGGCGCGGTGCTCGAGCTGGTGGAACAGGAGGGC 
GCCGAGGACCACATCTTCGCCAACAACTACGTGCCGCTGCACTGGGACGGCATGTACCTGGAGACGGTGCCG 
GAATTCCAGCTGTTCCACTGTGTCGACGCGCCCGGCGACAGCGACGGCGGCCGCACCACCTTCAGCTCGACC 
CCGGCGGCGCTGCAACTGGCCGACAGTAGCGAGCTGGAACTCTGGCGCCGCGCCAGCGGCCGGTACCAGCGC 
AGCGCGGCGCACTACAGCAGCCGCTCGGCGGCACCGATAGTCGAGCGCCACCCGCGCCGAGAATTCCCCATC 
CTGCGTTTCTGCGAACCGCCGGTCGAGGGCGACGCCAGCTTCATCAACCCCTCCGAGTTCCACTACGACGGC 
ATCGCCCCGGAACAGCGCGGCGAACTGCTCGCCAGCCTGCGCCGCTGCCTGTACCACCCACAGGCGCACTAC 
GCCCACCGCTGGCGCAGCGACGACCTGGTGATCGCCGACAACCTGACCCTGCTGCACGGTCGCGAGGCCTTC 
GTCCACCGCGCGCCGCGCCACCTGCGGCGGGTGCATATCCACGCCGAGCCGGCGCTGCGCAACCCGCACCTG 
CAGCGCGACTGA