ViewGene
Locus Name:
GeneID:
Location:

GeneID:2408
TrivialName: PA14_36180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36180
PAO1 Ortholog Locus:PA2206
Sequence Length:948
Protein Length:315
Start: 3223496
Stop: 3224443
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05594.1|AE004647_3 (AE004647) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 315/315 (100%), Positives = 315/315 (100%)
Sequence:
ATGTCCCGGATTCCCGACGCCAGCATCATCCACAGCCGCCTGCGCCTGCGCCAGTTGCGCCTGATGCTGGCC
CTGGAGGAACTCGGCTCGCTGCGCCGCGCCGCCGACGAGATCGGCATGACCCAGCCGGCGGCGACCAAGATG
CTCCACGAGGCCGAAGACCTGCTCGGCGTCGAGTTGTTCGAGCGTTTGCCGCGCGGCATGCGCGCGACGCCT
TTCGGCGAGACGCTGATCTATTACTCGCGGATGATCTTCGCCGAGCTGTCCGGGATGCGCGAGGAACTGGTC
GCGCTGGAGTCCGGCAACCTCGGCCGGGTCACCGTCGGAGCGATCCCGGCGCTGGCCTCGAGCCTGCTGACG
CGCACCATCGCGACCCTGAAGCAGAGTCATCCACGGCTGTCGATGAGCATCCAGGTGGACACCAGCGACGTG
CTGGTCCAGGCCCTGCAACAGGACCAGTTGGACGTGGTGCTCGGACGCATCCCCAGCGGCGCGCGCACCGAC
GACCTGGTGTTCGACAGCCTCGGCGAGGAGGAACTCTGCGTGGTGGTCGGCGCGCAGAACCCGTTGTCGCAG
GCACGCAAGCTGGACTGGGGCGAGTTGCAGGAGCTGACCTGGGTGTTGCAGCAGCACCCCAGCCCGATGCGC
GGGATCGTCAACCAGGCCTTCCACAACGCGCGCATCGACCTGCCGAGCAGTATCGTCGAGACCACCTCGATC
ATGACCCTGCTCTCCCTGCTGCAACAGACCGACATGATCGGCATCACTCCGCGCTCGGTGATCGAGGACTAC
CCGGGCAAGCACCTGCTGGCGATCCTGCCGATCCAGCTGGAGCCGCGCCTGCCGCCCTACGGCCTGATCACC
CGACGCAACCGGGTCCACTCCTCGGCCATGCAGACCTTCATGGCCAGCGTACATGCCGAACAGGCGCGGCAC
CTGGCGAAGTGA
Translation:
MSRIPDASIIHSRLRLRQLRLMLALEELGSLRRAADEIGMTQPAATKMLHEAEDLLGVELFERLPRGMRATP
FGETLIYYSRMIFAELSGMREELVALESGNLGRVTVGAIPALASSLLTRTIATLKQSHPRLSMSIQVDTSDV
LVQALQQDQLDVVLGRIPSGARTDDLVFDSLGEEELCVVVGAQNPLSQARKLDWGELQELTWVLQQHPSPMR
GIVNQAFHNARIDLPSSIVETTSIMTLLSLLQQTDMIGITPRSVIEDYPGKHLLAILPIQLEPRLPPYGLIT
RRNRVHSSAMQTFMASVHAEQARHLAK*
AnnotationID:2416GeneID:2408
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 19:07:12
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2206
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68440.1|AE016476_9 (AE016784) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 315

 Score =  194 bits (493), Expect = 6e-49
 Identities = 113/317 (35%), Positives = 184/317 (58%), Gaps = 11/317 (3%)

>gb|AAM36631.1| (AE011808) galactose-binding protein regulator [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 323

 Score =  176 bits (445), Expect = 2e-43
 Identities = 100/282 (35%), Positives = 162/282 (57%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score =  133 bits (336), Expect = 2e-32
Identities = 97/303 (32%), Positives = 151/303 (49%), Gaps = 7/303 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  97.6% aligned
Score =  114 bits (286), Expect = 2e-26
Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 3/207 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4819




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21965




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32549




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2408_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2408
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4059
                           PA2206_tr
                           translation of PA2206
                           315
                           99.99
                           99.99
                           0
                           1566.0
     

     
     
121831
                           gb|AAG05594.1|AE004647_3
                           (AE004647) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           315
                           99.99
                           99.99
                           0
                           1566.0
     

     






      

          
GC ORFID: 45410How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2206Glimmer Score: 

          
Start: 1730420Stop: 1729473

          
Length: 948


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2206 translation of PA2206Homolog Bit Score 607.0

          
Other Homologs:  t_PA2206 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCGGATTCCCGACGCCAGCATCATCCACAGCCGCCTGCGCCTGCGCCAGTTGCGCCTGATGCTGGCC 
CTGGAGGAACTCGGCTCGCTGCGCCGCGCCGCCGACGAGATCGGCATGACCCAGCCGGCGGCGACCAAGATG 
CTCCACGAGGCCGAAGACCTGCTCGGCGTCGAGTTGTTCGAGCGTTTGCCGCGCGGCATGCGCGCGACGCCT 
TTCGGCGAGACGCTGATCTATTACTCGCGGATGATCTTCGCCGAGCTGTCCGGGATGCGCGAGGAACTGGTC 
GCGCTGGAGTCCGGCAACCTCGGCCGGGTCACCGTCGGAGCGATCCCGGCGCTGGCCTCGAGCCTGCTGACG 
CGCACCATCGCGACCCTGAAGCAGAGTCATCCACGGCTGTCGATGAGCATCCAGGTGGACACCAGCGACGTG 
CTGGTCCAGGCCCTGCAACAGGACCAGTTGGACGTGGTGCTCGGACGCATCCCCAGCGGCGCGCGCACCGAC 
GACCTGGTGTTCGACAGCCTCGGCGAGGAGGAACTCTGCGTGGTGGTCGGCGCGCAGAACCCGTTGTCGCAG 
GCACGCAAGCTGGACTGGGGCGAGTTGCAGGAGCTGACCTGGGTGTTGCAGCAGCACCCCAGCCCGATGCGC 
GGGATCGTCAACCAGGCCTTCCACAACGCGCGCATCGACCTGCCGAGCAGTATCGTCGAGACCACCTCGATC 
ATGACCCTGCTCTCCCTGCTGCAACAGACCGACATGATCGGCATCACTCCGCGCTCGGTGATCGAGGACTAC 
CCGGGCAAGCACCTGCTGGCGATCCTGCCGATCCAGCTGGAGCCGCGCCTGCCGCCCTACGGCCTGATCACC 
CGACGCAACCGGGTCCACTCCTCGGCCATGCAGACCTTCATGGCCAGCGTACATGCCGAACAGGCGCGGCAC 
CTGGCGAAGTGA