ViewGene
Locus Name:
GeneID:
Location:

GeneID:2407
TrivialName: PA14_37370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37370
PAO1 Ortholog Locus:PA2098
Sequence Length:930
Protein Length:309
Start: 3326940
Stop: 3326011
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05486.1|AE004637_6 (AE004637) probable esterase/deacetylase [Pseudomonas aeruginosa PAO1]
Identities = 304/309 (98%), Positives = 306/309 (99%)
Sequence:
ATGTCGCCGCCGCAACGCCTGCGCGCCGGTCTCCTGCGCGGCTGCCTGCGCCTGTTGTTCCGCGGGCTGGTC
CGTCCGCCCATGCCAGTGGCGCTGCAACGCGGCGTGCTGCGCGGGCTGAGCCTGGCGACGCTGGGCGCCGGC
GGCGTCGTTCGCGAGCGCCGCAGCCTCGCCGGCGTGCCCTGCGAGTGGTTGCGGCCGCGCGGGGTGGAGGCG
CGGCGCCGGGTGCTCTACCTGCACGGCGGCGCCTACCTGATCGGCTCGCCGGCGACCCACCGGGCGATCACC
ACGCACCTGGCCCGGCGCTGCGCCGCCGAGGTTTGCGCAGTGGACTACCGACGTGCCCCGGAACATCCGTTC
CCCGCCGCCCGCGACGACGCCCTGGCGGTCTACCTGGCATTGCTGGAGGCCGGCCATTCGCCGCGCCAGCTG
CTGCTCGCCGGCGACTCGGCGGGCGGCCACCTGGCGCTGTCCCTGGCCCTGGAGCTGAAGGCGCGCGGCTTG
CCGTTGCCGGCCGGGTTGCTGCTGTTCTCGCCCTGGACCGACCTCAGCTGCCAGCGCCTGCACACGCCGGAG
GCCGGCGACCCGCTGCTGTCGAGGGCCTGGCTGGAAAGCGCGGTGCGCCTGCTGCTGCCGGCCGACGCGGAG
CCAGGCTCGGCCGCCCTGTCGCCGCTGCATGCCGACCTGGCGGGGCTGCCGCCGCTGCTGGTACAGGTCGGC
GAGGACGAACTGCTGCGCGACGACAGCCTGCGCCTGGCGCAACGGGCCGGCGAGCAGGGCGTCGCGGTGCGA
TTGCAGCGCTACGCCGGTTGCTGGCACGTGTTCCAGGCCCATGCCGGTGTGCTGGCCAGCGCCGACCGGGCG
TTGGACGAGGCGGCGGCGTTCGTCGTCGAATGCAGCGCGGAGGGCGGCCAGTGCAGAACATCCTGA
Translation:
MSPPQRLRAGLLRGCLRLLFRGLVRPPMPVALQRGVLRGLSLATLGAGGVVRERRSLAGVPCEWLRPRGVEA
RRRVLYLHGGAYLIGSPATHRAITTHLARRCAAEVCAVDYRRAPEHPFPAARDDALAVYLALLEAGHSPRQL
LLAGDSAGGHLALSLALELKARGLPLPAGLLLFSPWTDLSCQRLHTPEAGDPLLSRAWLESAVRLLLPADAE
PGSAALSPLHADLAGLPPLLVQVGEDELLRDDSLRLAQRAGEQGVAVRLQRYAGCWHVFQAHAGVLASADRA
LDEAAAFVVECSAEGGQCRTS*
AnnotationID:2415GeneID:2407
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 07:07:18
Gene Name:
Confidence Code:3
GeneProduct:putative esterase
Cell Localization:()
Synonyms:PA2098
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative lipase
Functional Category Confidence Code:5
COGs:COG0657
Secondary Functional Category(ies):carbon compound metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB42768.1| (AL939116) putative esterase [Streptomyces coelicolor A3(2)]
          Length = 266

 Score =  211 bits (536), Expect = 6e-54
 Identities = 119/249 (47%), Positives = 147/249 (59%), Gaps = 3/249 (1%)

>emb|CAD13967.1| (AL646059) PUTATIVE LIPASE/ESTERASE PROTEIN [Ralstonia
           solanacearum]
          Length = 317

 Score =  179 bits (453), Expect = 2e-44
 Identities = 110/254 (43%), Positives = 144/254 (56%), Gaps = 7/254 (2%)






 
Structural Features:
COG0657, Aes, Esterase/lipase [Lipid metabolism]
CD-Length = 312 residues,  87.8% aligned
Score =  160 bits (405), Expect = 2e-40
Identities = 114/276 (41%), Positives = 137/276 (49%), Gaps = 11/276 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:4817




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21963




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32608




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2407_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2407
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4058
                           PA2098_tr
                           translation of PA2098
                           309
                           98.38
                           99.02
                           0
                           1564.0
     

     
     
121815
                           gb|AAG05486.1|AE004637_6
                           (AE004637) probable esterase/deacetylase [Pseudomonas aeruginosa PAO1]
                           309
                           98.38
                           99.02
                           0
                           1564.0
     

     
     
121817
                           gb|AAA79277.1|
                           (M64783) acetyl-hydrolase [Streptomyces hygroscopicus]
                           316
                           37.97
                           52.84
                           24
                           462.0
     

     
     
121816
                           emb|CAB42768.1|
                           (AL939116) putative esterase [Streptomyces coelicolor A3(2)]
                           319
                           37.93
                           47.02
                           63
                           531.0
     

     
     
121819
                           emb|CAD13967.1|
                           (AL646059) PUTATIVE LIPASE/ESTERASE PROTEIN [Ralstonia solanacearum]
                           342
                           35.96
                           47.07
                           58
                           463.0
     

     






      

          
GC ORFID: 45409How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2098Glimmer Score: 

          
Start: 1626974Stop: 1627903

          
Length: 930


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2098 translation of PA2098Homolog Bit Score 607.0

          
Other Homologs:  t_PA2098 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCCGCCGCAACGCCTGCGCGCCGGTCTCCTGCGCGGCTGCCTGCGCCTGTTGTTCCGCGGGCTGGTC 
CGTCCGCCCATGCCAGTGGCGCTGCAACGCGGCGTGCTGCGCGGGCTGAGCCTGGCGACGCTGGGCGCCGGC 
GGCGTCGTTCGCGAGCGCCGCAGCCTCGCCGGCGTGCCCTGCGAGTGGTTGCGGCCGCGCGGGGTGGAGGCG 
CGGCGCCGGGTGCTCTACCTGCACGGCGGCGCCTACCTGATCGGCTCGCCGGCGACCCACCGGGCGATCACC 
ACGCACCTGGCCCGGCGCTGCGCCGCCGAGGTTTGCGCAGTGGACTACCGACGTGCCCCGGAACATCCGTTC 
CCCGCCGCCCGCGACGACGCCCTGGCGGTCTACCTGGCATTGCTGGAGGCCGGCCATTCGCCGCGCCAGCTG 
CTGCTCGCCGGCGACTCGGCGGGCGGCCACCTGGCGCTGTCCCTGGCCCTGGAGCTGAAGGCGCGCGGCTTG 
CCGTTGCCGGCCGGGTTGCTGCTGTTCTCGCCCTGGACCGACCTCAGCTGCCAGCGCCTGCACACGCCGGAG 
GCCGGCGACCCGCTGCTGTCGAGGGCCTGGCTGGAAAGCGCGGTGCGCCTGCTGCTGCCGGCCGACGCGGAG 
CCAGGCTCGGCCGCCCTGTCGCCGCTGCATGCCGACCTGGCGGGGCTGCCGCCGCTGCTGGTACAGGTCGGC 
GAGGACGAACTGCTGCGCGACGACAGCCTGCGCCTGGCGCAACGGGCCGGCGAGCAGGGCGTCGCGGTGCGA 
TTGCAGCGCTACGCCGGTTGCTGGCACGTGTTCCAGGCCCATGCCGGTGTGCTGGCCAGCGCCGACCGGGCG 
TTGGACGAGGCGGCGGCGTTCGTCGTCGAATGCAGCGCGGAGGGCGGCCAGTGCAGAACATCCTGA