ViewGene
Locus Name:
GeneID:
Location:

GeneID:2406
TrivialName: PA14_54480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54480
PAO1 Ortholog Locus:PA0759
Sequence Length:945
Protein Length:314
Start: 4829610
Stop: 4830554
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04148.1|AE004511_1 (AE004511) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 312/314 (99%), Positives = 312/314 (99%)
Sequence:
ATGGCCGACCCCGCTTTCCACACCCCGCTAGTCCATGAAGGCATCCTCGCCGTCCGCGGCCCGGACGCCGCC
AAATTCCTCCAGGGCCAGCTGACCTGCAACCTCGCCTACCTGAACGACGAGACCTCCAGCCTCGGCGGCCGC
TGCAACATCAAGGGCCGCCTGCTATCGAGCTTCCGCATCCTGCCCGAGGGCGACGGCCTGCTGCTGGCGATG
GCCGGCGAGCTGCTCGAGGCCCAGTTGGCGGACCTGAAGAAATACGCCGTATTCTCCAAGGCCAGCCTTGCC
GACGAGAGCGCAGCCTGGCTCCGCATAGGCTTGCGCGACGCCAGCGAGGCACTGCGCGCCCTGGGGATAGAC
ACCCCGGCGGAGAGCGGCAGGATCGCCCGCCACGGCGACCTGCTCGCCGTCGCCCTGGGCGACGCCCGCGTC
GAGCTATGGGTTCCGGCGCAGCGCGCCGAGGCGGTGCTTGCCAGGCTCCGCGAGCACAGCCGCGAGGCGCCG
CTCGACGATTGGCTGCTCGGCCAGGTGCGCGCAGGCATCGGCCAGGTGTTCGGCGCTACCCGCGAGCTGTTC
ATCCCACAGATGATCAACCTGCAGGCGGTCGGCGGGGTCAGCTTCAAGAAGGGCTGCTATACCGGCCAGGAA
ATCGTCGCCCGCATGCAGTATCTCGGCCGCCTCAAGCGCCGCCTGTATCGCCTGGCGCTGGACGCAGACGAG
GTGCCGGCGCCCGGCACCGGGCTGTTCTCGCCGGTCCATTCCACCAGCGTCGGCGAAGTGGTACTGGCCGCC
CGTACGCCGGAGAACAGCGTGGAATTGCTCGCCGTGCTGCAGGACGACGCCGTCGCCGACGGCCGGATCAGC
CTCGGAAGCGCCGAAGGAGCGCCGCTCGTCCTCCTCAATCTGCCTTACACGCTGGACAGCGACCGCGAAATC
CAGCGCTGA
Translation:
MADPAFHTPLVHEGILAVRGPDAAKFLQGQLTCNLAYLNDETSSLGGRCNIKGRLLSSFRILPEGDGLLLAM
AGELLEAQLADLKKYAVFSKASLADESAAWLRIGLRDASEALRALGIDTPAESGRIARHGDLLAVALGDARV
ELWVPAQRAEAVLARLREHSREAPLDDWLLGQVRAGIGQVFGATRELFIPQMINLQAVGGVSFKKGCYTGQE
IVARMQYLGRLKRRLYRLALDADEVPAPGTGLFSPVHSTSVGEVVLAARTPENSVELLAVLQDDAVADGRIS
LGSAEGAPLVLLNLPYTLDSDREIQR*
AnnotationID:2414GeneID:2406
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 13:01:35
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0759
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0354
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only].
     CD-Length = 305 residues,  97.0% aligned
     Score =  232 bits (593), Expect = 8e-62







   
Genomic Context:






   
Comment:


















    ReferenceID:4815




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21961




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2406
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4057
                           PA0759_tr
                           translation of PA0759
                           314
                           99.36
                           99.36
                           0
                           1565.0
     

     
     
121812
                           gb|AAG04148.1|AE004511_1
                           (AE004511) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           314
                           99.36
                           99.36
                           0
                           1565.0
     

     
     
121814
                           gb|AAN67045.1|AE016333_6
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           314
                           67.19
                           75.47
                           1
                           1037.0
     

     
     
121813
                           gb|AAO57684.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           316
                           65.18
                           77.53
                           3
                           1039.0
     

     






      

          
GC ORFID: 45408How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0759Glimmer Score: 

          
Start: 124297Stop: 123353

          
Length: 945


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0759 translation of PA0759Homolog Bit Score 607.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2596 (ORF: BLASTX 415.0), t_PA0759 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGACCCCGCTTTCCACACCCCGCTAGTCCATGAAGGCATCCTCGCCGTCCGCGGCCCGGACGCCGCC 
AAATTCCTCCAGGGCCAGCTGACCTGCAACCTCGCCTACCTGAACGACGAGACCTCCAGCCTCGGCGGCCGC 
TGCAACATCAAGGGCCGCCTGCTATCGAGCTTCCGCATCCTGCCCGAGGGCGACGGCCTGCTGCTGGCGATG 
GCCGGCGAGCTGCTCGAGGCCCAGTTGGCGGACCTGAAGAAATACGCCGTATTCTCCAAGGCCAGCCTTGCC 
GACGAGAGCGCAGCCTGGCTCCGCATAGGCTTGCGCGACGCCAGCGAGGCACTGCGCGCCCTGGGGATAGAC 
ACCCCGGCGGAGAGCGGCAGGATCGCCCGCCACGGCGACCTGCTCGCCGTCGCCCTGGGCGACGCCCGCGTC 
GAGCTATGGGTTCCGGCGCAGCGCGCCGAGGCGGTGCTTGCCAGGCTCCGCGAGCACAGCCGCGAGGCGCCG 
CTCGACGATTGGCTGCTCGGCCAGGTGCGCGCAGGCATCGGCCAGGTGTTCGGCGCTACCCGCGAGCTGTTC 
ATCCCACAGATGATCAACCTGCAGGCGGTCGGCGGGGTCAGCTTCAAGAAGGGCTGCTATACCGGCCAGGAA 
ATCGTCGCCCGCATGCAGTATCTCGGCCGCCTCAAGCGCCGCCTGTATCGCCTGGCGCTGGACGCAGACGAG 
GTGCCGGCGCCCGGCACCGGGCTGTTCTCGCCGGTCCATTCCACCAGCGTCGGCGAAGTGGTACTGGCCGCC 
CGTACGCCGGAGAACAGCGTGGAATTGCTCGCCGTGCTGCAGGACGACGCCGTCGCCGACGGCCGGATCAGC 
CTCGGAAGCGCCGAAGGAGCGCCGCTCGTCCTCCTCAATCTGCCTTACACGCTGGACAGCGACCGCGAAATC 
CAGCGCTGA