ViewGene
Locus Name:
GeneID:
Location:

GeneID:2405
TrivialName: PA14_02660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02660
PAO1 Ortholog Locus:PA0218
Sequence Length:921
Protein Length:306
Start: 237019
Stop: 236099
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03607.1|AE004459_11 (AE004459) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 306/306 (100%), Positives = 306/306 (100%)
Sequence:
GTGGCGTCCTATACCTTGCGGCAACTCAAGTATTTCGTGACCACCGTGGAATGCGGCAGCGTGGCCGAGGCC
TCGCGCAAGCTGTACATCGCCCAGCCGTCGATCTCCACGGCGGTGAAGGGTCTGGAGGAAAGCTTCGGCGTG
CAGCTGTTCATCCGCCACCACGCCCAGGGCGTGTCGCTGACCCCCGCCGGCGCGCGCTTCTACCGCAAGGCC
CAGGAGCTGCTGCGGATGGCCCACGAGTTCGAGCAGAACGCCCTGGCCGACAACGACGTGATCGCCGGGCAG
ATCGACATCGGCTGCTTCGAGACGGTCGCCCCGCTCTACCTGCCGGGCCTGATCGCCGGCTTTCGCCAGGCC
TATCCGGGGGTGGAGATCCGCATCCGCGACGGCGAGCAGCAGGAACTGGTGCAAGGCCTCACCTCGGGGCGC
TTCGACCTGGCCTTCCTCTACGAGCACGACCTCGACTCGACCATCGAGACCGAGCCGCTGATGCCGCCGCAA
CGACCCCaCGCGCTGCTCCCCGAAGGCCACCGCTTCGCCGGGCAGGCGCAAGTGTCGCTGCGCGACCTGTGC
CTGGAACCGATGATCCTGCTCGACGTGCAGCCCAGCCGCACCTATTTCGTCAGCCTGTTCGAGGAACTCGGC
CTGACGCCGAACATCGCCTTCAGCTCGCCGTCCATCGAGATGGTGCGCGGCATGGTCGGCCAGgGCTTCGGC
TTCTCCCTGCTGGTCACCCGCCCGCATTCGGAATGCACCTACGACGGCAAGAAGGTGGTCATGGTCGACCTC
GCCGAGCCGGTGTCCACCTCCGGGCTCGCCGCCGCCTGGCTGAAACGCGCGCAACTGACCAAGCCGGCACGA
TTGTTCGTCGACTACTGCCGGGAGCAACTGGGCAAGCTTGCCGAGCGCCGGCACTGA
Translation:
MASYTLRQLKYFVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARFYRKA
QELLRMAHEFEQNALADNDVIAGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGR
FDLAFLYEHDLDSTIETEPLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELG
LTPNIAFSSPSIEMVRGMVGQGFGFSLLVTRPHSECTYDGKKVVMVDLAEPVSTSGLAAAWLKRAQLTKPAR
LFVDYCREQLGKLAERRH*
AnnotationID:2413GeneID:2405
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 12:12:03
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA0218
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68183.1|AE016451_7 (AE016783) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 303

 Score =  512 bits (1319), Expect = e-145
 Identities = 249/300 (83%), Positives = 275/300 (91%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.7% aligned
Score =  147 bits (372), Expect = 1e-36
Identities = 90/302 (29%), Positives = 126/302 (41%), Gaps = 8/302 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  98.1% aligned
Score =  133 bits (337), Expect = 2e-32
Identities = 65/207 (31%), Positives = 96/207 (46%), Gaps = 3/207 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14581




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21959




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33566




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2405_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2405
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4056
                           PA0218_tr
                           translation of PA0218
                           306
                           99.99
                           99.99
                           0
                           1569.0
     

     
     
121810
                           gb|AAG03607.1|AE004459_11
                           (AE004459) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           306
                           99.67
                           99.99
                           0
                           1566.0
     

     
     
121811
                           gb|AAN68183.1|AE016451_7
                           (AE016783) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           306
                           81.04
                           90.19
                           3
                           1315.0
     

     






      

          
GC ORFID: 45407How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0218Glimmer Score: 

          
Start: 6038360Stop: 6037440

          
Length: 921


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0218 translation of PA0218Homolog Bit Score 608.0

          
Other Homologs:  t_PA0218 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCGTCCTATACCTTGCGGCAACTCAAGTATTTCGTGACCACCGTGGAATGCGGCAGCGTGGCCGAGGCC 
TCGCGCAAGCTGTACATCGCCCAGCCGTCGATCTCCACGGCGGTGAAGGGTCTGGAGGAAAGCTTCGGCGTG 
CAGCTGTTCATCCGCCACCACGCCCAGGGCGTGTCGCTGACCCCCGCCGGCGCGCGCTTCTACCGCAAGGCC 
CAGGAGCTGCTGCGGATGGCCCACGAGTTCGAGCAGAACGCCCTGGCCGACAACGACGTGATCGCCGGGCAG 
ATCGACATCGGCTGCTTCGAGACGGTCGCCCCGCTCTACCTGCCGGGCCTGATCGCCGGCTTTCGCCAGGCC 
TATCCGGGGGTGGAGATCCGCATCCGCGACGGCGAGCAGCAGGAACTGGTGCAAGGCCTCACCTCGGGGCGC 
TTCGACCTGGCCTTCCTCTACGAGCACGACCTCGACTCGACCATCGAGACCGAGCCGCTGATGCCGCCGCAA 
CGACCCCaCGCGCTGCTCCCCGAAGGCCACCGCTTCGCCGGGCAGGCGCAAGTGTCGCTGCGCGACCTGTGC 
CTGGAACCGATGATCCTGCTCGACGTGCAGCCCAGCCGCACCTATTTCGTCAGCCTGTTCGAGGAACTCGGC 
CTGACGCCGAACATCGCCTTCAGCTCGCCGTCCATCGAGATGGTGCGCGGCATGGTCGGCCAGgGCTTCGGC 
TTCTCCCTGCTGGTCACCCGCCCGCATTCGGAATGCACCTACGACGGCAAGAAGGTGGTCATGGTCGACCTC 
GCCGAGCCGGTGTCCACCTCCGGGCTCGCCGCCGCCTGGCTGAAACGCGCGCAACTGACCAAGCCGGCACGA 
TTGTTCGTCGACTACTGCCGGGAGCAACTGGGCAAGCTTGCCGAGCGCCGGCACTGA