ViewGene
Locus Name:
GeneID:
Location:

GeneID:2403
TrivialName: PA14_18340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18340
PAO1 Ortholog Locus:PA3555
Sequence Length:888
Protein Length:295
Start: 1574123
Stop: 1573236
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06943.1|AE004776_6 (AE004776) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 292/295 (98%), Positives = 293/295 (99%)
Sequence:
GTGATCCAGGCCGGCCTGCGCATCGACGTCGACACCTTCCGCGGCACCCGCGACGGGGTGCCGCGGCTGCTC
GACCTGCTCGACGAAGCCGGGCTGAAGGCGACCTTCTTCTTCAGCGTCGGCCCGGACAACATGGGCCGCCAC
CTCTGGCGCCTGGCGCGCCCGGCGTTCTTCTGGAAGATGCTCCGCTCGCGCGCCGCCAGCCTGTATGGCTGG
GACATCCTGCTGGCCGGCACCGCCTGGCCGGGCAAGCCGATCGGCCGCGAACTCGGCCCGCTGATGCGGCGG
ACCCAGGCCGCCGGCCACGAGGTCGGCCTGCACGCCTGGGACCACCATGCCTGGCAGACCCACGTCGGCGTC
TGGAGCGCGCAGCAGCTCGGCGAGCAGATCCGCCGCGGCAGCGATTGCCTGGCGGACATCCTCGGCCAGCCG
GTGCGTTGTTCCGCCGCCGCCGGCTGGCGCGCCGATGGCCGGGTGGTCGAGGCCAAGCAGCCCTTCGGCTTC
CGCTACAACAGCGACTGCCGCGGACGCGGCGCGTTCCGCCCGCGCCTGGCCGACGGCAGCCCCGGCATCCCG
CAGGTGCCGGTGAACCTGCCGACCTTCGACGAGGTGGTCGGTCCCGGCCTGCCGCGCGAGGCCTACAACGAC
TTCATCCTGGAACGCTTCGCCGCTGGCCGCGACAACGTCTACACCATCCACGCCGAGGTCGAGGGGCTGCTC
CTCGCCCCGGCGTTCCGCGAACTGCTGCGGCGCGCCGAACGGCGTGGCATCCGCTTCCGCCCGTTGGGCGAA
CTGCTGCCGGACGATCCGCGCAGCCTGCCGCTGGCCGAACTGGTGCGCGGCCGCCTGGCCGGCCGCGAGGGC
TGGCTGGGAGTGCGCCAGCCATGA
Translation:
MIQAGLRIDVDTFRGTRDGVPRLLDLLDEAGLKATFFFSVGPDNMGRHLWRLARPAFFWKMLRSRAASLYGW
DILLAGTAWPGKPIGRELGPLMRRTQAAGHEVGLHAWDHHAWQTHVGVWSAQQLGEQIRRGSDCLADILGQP
VRCSAAAGWRADGRVVEAKQPFGFRYNSDCRGRGAFRPRLADGSPGIPQVPVNLPTFDEVVGPGLPREAYND
FILERFAAGRDNVYTIHAEVEGLLLAPAFRELLRRAERRGIRFRPLGELLPDDPRSLPLAELVRGRLAGREG
WLGVRQP*
AnnotationID:2411GeneID:2403
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 05:05:19
Gene Name:
Confidence Code:3
GeneProduct:putative polysaccharide deacetylase
Cell Localization:()
Synonyms:PA3555
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01522,COG0726
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam01522, Polysacc_deac_1, Polysaccharide deacetylase.
CD-Length = 124 residues,  87.1% aligned
Score = 62.2 bits (151), Expect = 7e-11
Identities = 39/156 (25%), Positives = 55/156 (35%), Gaps = 48/156 (30%)

COG0726, CDA1, Predicted xylanase/chitin deacetylase 
[Carbohydrate transport and metabolism]
CD-Length = 267 residues,  91.4% aligned
Score = 74.7 bits (182), Expect = 1e-14
Identities = 50/277 (18%), Positives = 82/277 (29%), Gaps = 39/277 (14%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14579




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21955




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32014




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2403_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2403
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4054
                           PA3555_tr
                           translation of PA3555
                           295
                           98.98
                           99.32
                           0
                           1568.0
     

     
     
121681
                           gb|AAG06943.1|AE004776_6
                           (AE004776) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           295
                           98.64
                           99.32
                           0
                           1565.0
     

     
     
121682
                           gb|AAO68269.1|
                           (AE016836) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           300
                           62.66
                           72.66
                           6
                           999.0
     

     
     
121683
                           emb|CAD07533.1|
                           (AL627274) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           300
                           62.66
                           72.66
                           6
                           999.0
     

     
     
121684
                           gb|AAL21201.1|
                           (AE008803) putative cytoplasmic protein [Salmonella typhimurium LT2]
                           300
                           62.33
                           72.33
                           6
                           991.0
     

     






      

          
GC ORFID: 45405How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3555Glimmer Score: 

          
Start: 3379812Stop: 3380699

          
Length: 888


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3555 translation of PA3555Homolog Bit Score 608.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2586 (ORF: BLASTX 404.0), t_PA3555 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCCAGGCCGGCCTGCGCATCGACGTCGACACCTTCCGCGGCACCCGCGACGGGGTGCCGCGGCTGCTC 
GACCTGCTCGACGAAGCCGGGCTGAAGGCGACCTTCTTCTTCAGCGTCGGCCCGGACAACATGGGCCGCCAC 
CTCTGGCGCCTGGCGCGCCCGGCGTTCTTCTGGAAGATGCTCCGCTCGCGCGCCGCCAGCCTGTATGGCTGG 
GACATCCTGCTGGCCGGCACCGCCTGGCCGGGCAAGCCGATCGGCCGCGAACTCGGCCCGCTGATGCGGCGG 
ACCCAGGCCGCCGGCCACGAGGTCGGCCTGCACGCCTGGGACCACCATGCCTGGCAGACCCACGTCGGCGTC 
TGGAGCGCGCAGCAGCTCGGCGAGCAGATCCGCCGCGGCAGCGATTGCCTGGCGGACATCCTCGGCCAGCCG 
GTGCGTTGTTCCGCCGCCGCCGGCTGGCGCGCCGATGGCCGGGTGGTCGAGGCCAAGCAGCCCTTCGGCTTC 
CGCTACAACAGCGACTGCCGCGGACGCGGCGCGTTCCGCCCGCGCCTGGCCGACGGCAGCCCCGGCATCCCG 
CAGGTGCCGGTGAACCTGCCGACCTTCGACGAGGTGGTCGGTCCCGGCCTGCCGCGCGAGGCCTACAACGAC 
TTCATCCTGGAACGCTTCGCCGCTGGCCGCGACAACGTCTACACCATCCACGCCGAGGTCGAGGGGCTGCTC 
CTCGCCCCGGCGTTCCGCGAACTGCTGCGGCGCGCCGAACGGCGTGGCATCCGCTTCCGCCCGTTGGGCGAA 
CTGCTGCCGGACGATCCGCGCAGCCTGCCGCTGGCCGAACTGGTGCGCGGCCGCCTGGCCGGCCGCGAGGGC 
TGGCTGGGAGTGCGCCAGCCATGA