ViewGene
Locus Name:
GeneID:
Location:

GeneID:2402
TrivialName: PA14_21060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21060
PAO1 Ortholog Locus:PA3323
Sequence Length:876
Protein Length:291
Start: 1821654
Stop: 1820779
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06711.1|AE004754_7 (AE004754) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 290/291 (99%), Positives = 290/291 (99%)
Sequence:
ATGTCCCAAGGCGCCTGGGTACCCACTCCCGACGATCTCGATCACTTCCGCCAGGTCCAGCGACTGGCCTAT
ACCTGCTGCGAAACCATCCACGGCGAACTGCGCCCCGGCATCAGCGAGAGGGAAGCCGCGGCGCTGATGAAG
ACCTGGTTGCAGGATCACGGCGTCGACGACTGGTTCCACCAGCCCTTCGCCTGGTTCGGCAGCCGCACCTCG
TTCAAGGGCTTCGACGGCCTGCGTCATCTCGGTGGCTTCAACCTGGCCTTCTACCCCGGCAAGCAGCGCCTG
GAGGAAGGCATGCCGTTCATCCTCGACTGCGCGCCGACCCTCGGCGCCTATACCGCCGATGTCGGCTACTCC
GGCGCGCTCGGCCACAACCTGTTGCAGGAGCGGCTGATGGACGACCTGCTGATACACCGACGCACCATCCTC
GACCTGGTCCGCGAACGGCGCCCCCTGGCCGAAGTCAGCCAGGCGGTCGACCGGCTCTGCGTGATCCAGGGC
ACCCTGCCACGGCACAAGGCCTATCCCTTCGAAGTGCTCGCCCATCGCGTGGAAAAGCTCGGCAACCGCCGC
GGTCCCTCGGTGGCGCGCTTCGGCGTGCGCAACCTGTACACCCTGACGCGCAACGCGCTGGTCACCGGCAAG
CGCGAAGGCTGGTCGCCGCTGTGGTCCAGCGGCAAGCGCTCCGAGCACCCGCCGACGCCCGGTCTCTGGGCG
GTGGAACCGCACCTGGGGCTACGCGGGGTGGGCGCCAAGTTCGAGGAACTGCTGGTAGTCACCGAAGACGAC
GCCTACTGGCTCGACGACGACCTGCCGCACGTCCGCCGCTGGCAGGCGCGCGGCCTGCTGCCGCAAGCACGG
GAGGCCGCATGA
Translation:
MSQGAWVPTPDDLDHFRQVQRLAYTCCETIHGELRPGISEREAAALMKTWLQDHGVDDWFHQPFAWFGSRTS
FKGFDGLRHLGGFNLAFYPGKQRLEEGMPFILDCAPTLGAYTADVGYSGALGHNLLQERLMDDLLIHRRTIL
DLVRERRPLAEVSQAVDRLCVIQGTLPRHKAYPFEVLAHRVEKLGNRRGPSVARFGVRNLYTLTRNALVTGK
REGWSPLWSSGKRSEHPPTPGLWAVEPHLGLRGVGAKFEELLVVTEDDAYWLDDDLPHVRRWQARGLLPQAR
EAA*
AnnotationID:2410GeneID:2402
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:23
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3323
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4807




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21953




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32240




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2402_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2402
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4053
                           PA3323_tr
                           translation of PA3323
                           291
                           99.65
                           99.65
                           0
                           1569.0
     

     
     
121678
                           gb|AAG06711.1|AE004754_7
                           (AE004754) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           291
                           99.65
                           99.65
                           0
                           1569.0
     

     
     
121680
                           dbj|BAC71963.1|
                           (AP005038) hypothetical protein [Streptomyces avermitilis MA-4680]
                           310
                           50.32
                           63.54
                           37
                           792.0
     

     
     
121679
                           emb|CAA22227.1|
                           (AL939118) conserved hypothetical protein SCD78.22c [Streptomyces coelicolor A3(2)]
                           356
                           44.94
                           53.93
                           82
                           794.0
     

     






      

          
GC ORFID: 45404How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3323Glimmer Score: 

          
Start: 3132278Stop: 3133153

          
Length: 876


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3323 translation of PA3323Homolog Bit Score 608.0

          
Other Homologs:  t_PA3323 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCAAGGCGCCTGGGTACCCACTCCCGACGATCTCGATCACTTCCGCCAGGTCCAGCGACTGGCCTAT 
ACCTGCTGCGAAACCATCCACGGCGAACTGCGCCCCGGCATCAGCGAGAGGGAAGCCGCGGCGCTGATGAAG 
ACCTGGTTGCAGGATCACGGCGTCGACGACTGGTTCCACCAGCCCTTCGCCTGGTTCGGCAGCCGCACCTCG 
TTCAAGGGCTTCGACGGCCTGCGTCATCTCGGTGGCTTCAACCTGGCCTTCTACCCCGGCAAGCAGCGCCTG 
GAGGAAGGCATGCCGTTCATCCTCGACTGCGCGCCGACCCTCGGCGCCTATACCGCCGATGTCGGCTACTCC 
GGCGCGCTCGGCCACAACCTGTTGCAGGAGCGGCTGATGGACGACCTGCTGATACACCGACGCACCATCCTC 
GACCTGGTCCGCGAACGGCGCCCCCTGGCCGAAGTCAGCCAGGCGGTCGACCGGCTCTGCGTGATCCAGGGC 
ACCCTGCCACGGCACAAGGCCTATCCCTTCGAAGTGCTCGCCCATCGCGTGGAAAAGCTCGGCAACCGCCGC 
GGTCCCTCGGTGGCGCGCTTCGGCGTGCGCAACCTGTACACCCTGACGCGCAACGCGCTGGTCACCGGCAAG 
CGCGAAGGCTGGTCGCCGCTGTGGTCCAGCGGCAAGCGCTCCGAGCACCCGCCGACGCCCGGTCTCTGGGCG 
GTGGAACCGCACCTGGGGCTACGCGGGGTGGGCGCCAAGTTCGAGGAACTGCTGGTAGTCACCGAAGACGAC 
GCCTACTGGCTCGACGACGACCTGCCGCACGTCCGCCGCTGGCAGGCGCGCGGCCTGCTGCCGCAAGCACGG 
GAGGCCGCATGA