ViewGene
Locus Name:
GeneID:
Location:

GeneID:2400
TrivialName: PA14_38220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38220
PAO1 Ortholog Locus:PA2033
Sequence Length:909
Protein Length:302
Start: 3411303
Stop: 3410395
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05421.1|AE004629_10 (AE004629) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 300/302 (99%), Positives = 300/302 (99%)
Sequence:
ATGTCGCAACCCGCCTATCGTCTGTTCAATGTCGAACTCAAGCGCCGCGAGCAACTCAGCCCGGCGCTGACC
CGCTTCGTCTTCGGCGGCCCGGAGGTCGCCGAGATGAAGACCCTGGCCGCCGACCAGCGGATCAAGATCTTC
TTCCCCGATGCCAGCGGCCAGCCGCCCAGCCTGCCCGGTGGCAGCGAGTGGTACCAGGCCTATCGCAGCGTC
GAGCCGGCTCGCCGGCCGCCGATGCGTACCTACACCATCCGTGCGCTGCGCGCCGAGCAGGAGGAGGTCGAC
GTGGAGTTCGTCCTCCACGGCGAGAACGGCCCGGCCTCGGCCTGGGCGACCCACGCGCGGATCGGCGACCGC
CTGCAACTGGCCGCGCCCAACCGGCAATACGGCGATGACCCCGGCGGCTACGAATGGAAGCCGCCGGCTGGC
GTCCGCCATATCCTGCTGATCGCCGACGAAACCGCCTTGCCCGCGGTGGCGGGAATTCTCGAGGAGCTGGCC
GGCGAAGCCGAGCCGCCGGTGGTCGAGGCCTTTCTCGAAGTGCCGGGAGAAGCCGATATCCTCGACCTGCCG
GCGATTCCCGGTGCGCGCCTGCACTGGCTGCCGCGCCACCAGGCCGGCATCCATTCGCGCAACGGCGAGCGG
ATGATCGAGGCGGCGCGCCAGGCGCGGCTGCCGGAGCGCGAGGTGGCGGGTGGTGCGGCCCagGAGCTGGAG
GACATCGATATCGACGAGGAGATCCTCTGGGAACTGGCGAGCCCCGAGAGCGGCAGTTTCTACGCCTGGGTC
GCCGGCGAGTCGGCGGCGGTGATGGCGATCCGGCGCTACCTGGTGCAGGAGCGCGGTATCGACAAGCGTCAT
CTGACCCTGATGGGCTATTGGCGCCTGGGCAAGGTGTTCGACTGA
Translation:
MSQPAYRLFNVELKRREQLSPALTRFVFGGPEVAEMKTLAADQRIKIFFPDASGQPPSLPGGSEWYQAYRSV
EPARRPPMRTYTIRALRAEQEEVDVEFVLHGENGPASAWATHARIGDRLQLAAPNRQYGDDPGGYEWKPPAG
VRHILLIADETALPAVAGILEELAGEAEPPVVEAFLEVPGEADILDLPAIPGARLHWLPRHQAGIHSRNGER
MIEAARQARLPEREVAGGAAQELEDIDIDEEILWELASPESGSFYAWVAGESAAVMAIRRYLVQERGIDKRH
LTLMGYWRLGKVFD*
AnnotationID:2408GeneID:2400
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 21:09:21
Gene Name:
Confidence Code:3
GeneProduct:putative siderophore-interacting protein
Cell Localization:()
Synonyms:PA2033
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04954,COG2375
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam04954, SIP, Siderophore-interacting protein.
CD-Length = 261 residues, 100.0% aligned
Score =  251 bits (643), Expect = 6e-68
Identities = 114/311 (36%), Positives = 142/311 (45%), Gaps = 59/311 (18%)

COG2375, ViuB, Siderophore-interacting protein [Inorganic ion transport and metabolism]
CD-Length = 265 residues,  96.2% aligned
Score =  225 bits (575), Expect = 5e-60
Identities = 117/303 (38%), Positives = 146/303 (48%), Gaps = 49/303 (16%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4803




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21949




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32672




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2400_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2400
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4051
                           PA2033_tr
                           translation of PA2033
                           302
                           99.33
                           99.33
                           0
                           1568.0
     

     
     
121674
                           gb|AAG05421.1|AE004629_10
                           (AE004629) hypothetical protein PA2033 [Pseudomonas aeruginosa PAO1]
                           302
                           99.33
                           99.33
                           0
                           1568.0
     

     






      

          
GC ORFID: 45402How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2033Glimmer Score: 

          
Start: 1542607Stop: 1543515

          
Length: 909


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2033 translation of PA2033Homolog Bit Score 608.0

          
Other Homologs:  t_PA2033 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCAACCCGCCTATCGTCTGTTCAATGTCGAACTCAAGCGCCGCGAGCAACTCAGCCCGGCGCTGACC 
CGCTTCGTCTTCGGCGGCCCGGAGGTCGCCGAGATGAAGACCCTGGCCGCCGACCAGCGGATCAAGATCTTC 
TTCCCCGATGCCAGCGGCCAGCCGCCCAGCCTGCCCGGTGGCAGCGAGTGGTACCAGGCCTATCGCAGCGTC 
GAGCCGGCTCGCCGGCCGCCGATGCGTACCTACACCATCCGTGCGCTGCGCGCCGAGCAGGAGGAGGTCGAC 
GTGGAGTTCGTCCTCCACGGCGAGAACGGCCCGGCCTCGGCCTGGGCGACCCACGCGCGGATCGGCGACCGC 
CTGCAACTGGCCGCGCCCAACCGGCAATACGGCGATGACCCCGGCGGCTACGAATGGAAGCCGCCGGCTGGC 
GTCCGCCATATCCTGCTGATCGCCGACGAAACCGCCTTGCCCGCGGTGGCGGGAATTCTCGAGGAGCTGGCC 
GGCGAAGCCGAGCCGCCGGTGGTCGAGGCCTTTCTCGAAGTGCCGGGAGAAGCCGATATCCTCGACCTGCCG 
GCGATTCCCGGTGCGCGCCTGCACTGGCTGCCGCGCCACCAGGCCGGCATCCATTCGCGCAACGGCGAGCGG 
ATGATCGAGGCGGCGCGCCAGGCGCGGCTGCCGGAGCGCGAGGTGGCGGGTGGTGCGGCCCagGAGCTGGAG 
GACATCGATATCGACGAGGAGATCCTCTGGGAACTGGCGAGCCCCGAGAGCGGCAGTTTCTACGCCTGGGTC 
GCCGGCGAGTCGGCGGCGGTGATGGCGATCCGGCGCTACCTGGTGCAGGAGCGCGGTATCGACAAGCGTCAT 
CTGACCCTGATGGGCTATTGGCGCCTGGGCAAGGTGTTCGACTGA