ViewGene
Locus Name:
GeneID:
Location:

GeneID:240
TrivialName: PA14_53140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53140
PAO1 Ortholog Locus:PA0861
Sequence Length:2472
Protein Length:823
Start: 4711502
Stop: 4709031
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04250.1|AE004521_1 (AE004521) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 750/755 (99%), Positives = 753/755 (99%)
Sequence:
TTGAATGGTAGATGGAATGAGGCAGAACCGGACTCTCGACAAGCCCCGCCTGCTCGGCCTGGTATGGCCCTT
CATCGTCGTGGTGCTGTTGCAGGCCATGCTGGCGGGCGGCAGTCTCTACGTCCTCTCCGCGGTGCGCAGCTA
TGTCGGCGGCGAAAGCCTCTGGTCGAAGGGCCAGAAGGATGCCATCTACTATCTCACCCTCATGCCGACTCA
CGCGCCGACGAAGACTTCCGCCGCTACGAGGAGGCCATCGCGATCCCCCTCGGCGACCGCGAGATGCGCCTT
GCCCTGGACCAGCCCGACCCGGACATCGAGGCGGCCCGCCAGGGCATCCTCAAGGGCGGCAACCATGCCGAC
GACGTTACCGCGATCATCTGGCTGTACCGCAACTTCCACGACTTCAGTTACTTCGAGCGCGCCATCGAGCTG
TGGCTGGTGGGCGACAAGTACGTCATGGAACTGATCGACGTCGCCGGCAAGATGCGCGCGGGCATCGGCACC
GGGCAGGCCAGTGCCGAGCAGGTGCAACAGTGGAAGACCGAGATCCACGCGATCAACGAGAAGGTCACGCCG
GCGGCCAAGGCCTTCAGCGACGCCCTCGGCGAGGGCTCGCGGGCCTTGCTCAGGCTGCTGCTGGTGGCCAAC
CTGACCACCGCCAGCGTGCTCATCCTCCTGGCGTTCCTGCGTACCCGGCAGCAACTGATGCAGCGCCAGGAA
GTGGAGAACGCCCTCGATGCCGAGCGCGAACGGGCCCAGATCACTCTGGCCTCGATCGGCGACGGAGTGATC
ACCGCCGACACCCAGGGGGGCATTTCCTACCTCAACCCGGCCGCCGAGCAGATGACCAACTGGACGCTGGAC
AAGGCCCGCGGCCTGCCCCTGGCGTCGCTGTTCCGGATCGTCGACGAAAGCTCGCGGGAGGAGGGCATGCTG
CTGATCGAGCAGATCCTCAGCGGCGAGATCGACGGCGGCCGCGAGCATTCCAAGCTGGTCCTGCGCCACGAC
GGCAGCAGCGTGCCGGTGACCCTGGTGGGCGCGCCGATCCATCGCGGCGGCGAGATCACCGGGGTGGTCCTG
GTGCTTCACGACATGACCCGCGAGCGCCAGTACATGGCGCGCCTGTCCTGGCAGGCGACCCACGATGCGTTG
ACCGGGCTGACCAACCGCCGCGAGTTCGAGTATCGCCTGCAGATAGCGCTGGAACGCCTGGAGCGCAACAGC
GGGCGGCACGCCCTGATGTTCCTCGACCTGGACCAGTTCAAGCTGGTCAACGACACCTGCGGCCACGCCGCC
GGCGACGAACTGCTGCGCCAGGTCTGCACCCTGCTGCAACAAGGCTTGCGCGAGGGCGACACGCTGGCGCGG
CTGGGCGGCGACGAGTTCGGCATCCTGCTGGAGAACTGCCCGGCGGAAAAAGCCGTGGAGATCGCCGACCAT
CTGCGCAAGACGGTCCAGGACCTGCACTTCACCTGGAGCGGGCAGCCGTTCAACTGCACCGTCAGCGTCGGC
CTGGTGCACCTGCTGCCGGGTATCTCGACCCTCGAGGAGGCACTGCGCTCCGCCGACATGGCCTGCTACATG
GCCAAGGAAAAGGGGCGCAATCGGGTCCAGGTGTTCCATCAGGACGACGTCGAACTGTCGATGCGCTTCGGC
GAGATGACCTGGGTCCAGCGCATCCACCTGGCGCTGGAGGAAGACCGCTTCAGTCTCTATGCCCAGCCCATC
GTGCCGCTGGGCGAAGGTGCGGAGGAGGGCTTGCACGTCGAACTGCTGCTGCGCCTGCGCGACGAGGGCGGG
CGCCTGGTGCCGCCGCTGAGCTTCATACCCGCCGCCGAGCGCTACGGCCTGATGACGCTGATCGATCGCTGG
GTGGTGGAGAATGCCTTCCGCACCCTCGTCGAGCGCGCCCAGGACCCTCGCGCCGAGCCGATCGGCACCTGC
GCCATCAACCTCTCCGGCGCGACCATCGGCGACGAGTCGTTCCTGCAGTTCCTCACCGAGCTGTTCGCCCGT
TACCGCATTCCGCCGCAGACGATCTGCTTCGAGGTCACCGAAACCGTGGCGGTTGCCAACCTGGCCAGCGCC
ATCCGCTTCATCAACGAGCTCAAGGACACCGGTTGTCGTTTCTCCCTGGACGATTTCTGCGCCGGCATGTCG
TCCTTCATCTACCTCAAGCACCTGCCGGTGGATTACCTGAAGATCGATGGCAGCTTCGTCAAGGACATGCTC
GAGGATCCCATCGATCGCGCCATGGTCCAGGTGATCAACCATATCGGCCACGTGATGGGCAAACGTACCATC
GCCGAGTTCGTCGAAACCGTCGAAGTGATGGAGGCGCTGCGCGAGATCGGCATCGACTATGCCCAGGGCCTG
GCCATCGGCGCGCCCCTGCCGTTCAGTCGCCAGCCTCCGGGCGCAGGGCTGGATGCCCAGGGCCTGTGGCCG
AGCCTCGGACAGAACCTCCGGTAG
Translation:
MNGRWNEAEPDSRQAPPARPGMALHRRGAVAGHAGGRQSLRPLRGAQLCRRRKPLVEGPEGCHLLSHPHADS
RADEDFRRYEEAIAIPLGDREMRLALDQPDPDIEAARQGILKGGNHADDVTAIIWLYRNFHDFSYFERAIEL
WLVGDKYVMELIDVAGKMRAGIGTGQASAEQVQQWKTEIHAINEKVTPAAKAFSDALGEGSRALLRLLLVAN
LTTASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPAAEQMTNWTLD
KARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRHDGSSVPVTLVGAPIHRGGEITGVVL
VLHDMTRERQYMARLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAA
GDELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWSGQPFNCTVSVG
LVHLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQPI
VPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVERAQDPRAEPIGTC
AINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLASAIRFINELKDTGCRFSLDDFCAGMS
SFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQVINHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGL
AIGAPLPFSRQPPGAGLDAQGLWPSLGQNLR*
AnnotationID:250GeneID:240
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 17:05:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0861
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2200, pfam00563, COG2199
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Last  ~92% of  GeneID240 (PA14_53140) and PA0861 are 750/755 (99%) identical.  However first 69 amino 
acids of GID240 (and first 64 amino acids of PA0861) do not align.






 
Structural Features:
COG2200, Rtn, FOG: EAL domain [Signal transduction mechanisms]. Score: 234, 9e-62
pfam00563, EAL, EAL domain. This domain is found in diverse ba...  Score: 220, 2e-57
COG2199, FOG: GGDEF domain [Signal transduction mecha... Score: 174, 1e-43






   
Genomic Context:






   
Comment:
Confirmed frame-shift results in altered sequence in first 64 aa of PAO1 PA0861 
(first 68 aa of PA14_53140, GeneID 240).


















    ReferenceID:14091




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17625




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:240
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
407
                           PA0861_tr
                           translation of PA0861
                           835
                           91.49
                           92.57
                           29
                           3836.0
     

     
     
22916
                           gb|AAG04250.1|AE004521_1
                           (AE004521) hypothetical protein PA0861 [Pseudomonas aeruginosa PAO1]
                           835
                           91.49
                           92.57
                           29
                           3836.0
     

     
     
22918
                           gb|AAO55257.1|
                           (AE016862) sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           844
                           54.26
                           70.26
                           47
                           2273.0
     

     
     
22919
                           dbj|BAB50121.1|
                           (AP003001) hypothetical protein [Mesorhizobium loti]
                           854
                           52.69
                           65.57
                           53
                           2204.0
     

     
     
22917
                           gb|AAN67381.1|AE016364_6
                           (AE016780) sensory box protein/GGDEF family protein [Pseudomonas putida KT2440]
                           1009
                           48.16
                           59.16
                           222
                           2475.0
     

     






      

          
GC ORFID: 43242How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0861Glimmer Score: 

          
Start: 242405Stop: 244876

          
Length: 2472


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0861 translation of PA0861Homolog Bit Score 1486.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7724 (ORF: BLASTX 884.0), t_PA0861 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGAATGGTAGATGGAATGAGGCAGAACCGGACTCTCGACAAGCCCCGCCTGCTCGGCCTGGTATGGCCCTT 
CATCGTCGTGGTGCTGTTGCAGGCCATGCTGGCGGGCGGCAGTCTCTACGTCCTCTCCGCGGTGCGCAGCTA 
TGTCGGCGGCGAAAGCCTCTGGTCGAAGGGCCAGAAGGATGCCATCTACTATCTCACCCTCATGCCGACTCA 
CGCGCCGACGAAGACTTCCGCCGCTACGAGGAGGCCATCGCGATCCCCCTCGGCGACCGCGAGATGCGCCTT 
GCCCTGGACCAGCCCGACCCGGACATCGAGGCGGCCCGCCAGGGCATCCTCAAGGGCGGCAACCATGCCGAC 
GACGTTACCGCGATCATCTGGCTGTACCGCAACTTCCACGACTTCAGTTACTTCGAGCGCGCCATCGAGCTG 
TGGCTGGTGGGCGACAAGTACGTCATGGAACTGATCGACGTCGCCGGCAAGATGCGCGCGGGCATCGGCACC 
GGGCAGGCCAGTGCCGAGCAGGTGCAACAGTGGAAGACCGAGATCCACGCGATCAACGAGAAGGTCACGCCG 
GCGGCCAAGGCCTTCAGCGACGCCCTCGGCGAGGGCTCGCGGGCCTTGCTCAGGCTGCTGCTGGTGGCCAAC 
CTGACCACCGCCAGCGTGCTCATCCTCCTGGCGTTCCTGCGTACCCGGCAGCAACTGATGCAGCGCCAGGAA 
GTGGAGAACGCCCTCGATGCCGAGCGCGAACGGGCCCAGATCACTCTGGCCTCGATCGGCGACGGAGTGATC 
ACCGCCGACACCCAGGGGGGCATTTCCTACCTCAACCCGGCCGCCGAGCAGATGACCAACTGGACGCTGGAC 
AAGGCCCGCGGCCTGCCCCTGGCGTCGCTGTTCCGGATCGTCGACGAAAGCTCGCGGGAGGAGGGCATGCTG 
CTGATCGAGCAGATCCTCAGCGGCGAGATCGACGGCGGCCGCGAGCATTCCAAGCTGGTCCTGCGCCACGAC 
GGCAGCAGCGTGCCGGTGACCCTGGTGGGCGCGCCGATCCATCGCGGCGGCGAGATCACCGGGGTGGTCCTG 
GTGCTTCACGACATGACCCGCGAGCGCCAGTACATGGCGCGCCTGTCCTGGCAGGCGACCCACGATGCGTTG 
ACCGGGCTGACCAACCGCCGCGAGTTCGAGTATCGCCTGCAGATAGCGCTGGAACGCCTGGAGCGCAACAGC 
GGGCGGCACGCCCTGATGTTCCTCGACCTGGACCAGTTCAAGCTGGTCAACGACACCTGCGGCCACGCCGCC 
GGCGACGAACTGCTGCGCCAGGTCTGCACCCTGCTGCAACAAGGCTTGCGCGAGGGCGACACGCTGGCGCGG 
CTGGGCGGCGACGAGTTCGGCATCCTGCTGGAGAACTGCCCGGCGGAAAAAGCCGTGGAGATCGCCGACCAT 
CTGCGCAAGACGGTCCAGGACCTGCACTTCACCTGGAGCGGGCAGCCGTTCAACTGCACCGTCAGCGTCGGC 
CTGGTGCACCTGCTGCCGGGTATCTCGACCCTCGAGGAGGCACTGCGCTCCGCCGACATGGCCTGCTACATG 
GCCAAGGAAAAGGGGCGCAATCGGGTCCAGGTGTTCCATCAGGACGACGTCGAACTGTCGATGCGCTTCGGC 
GAGATGACCTGGGTCCAGCGCATCCACCTGGCGCTGGAGGAAGACCGCTTCAGTCTCTATGCCCAGCCCATC 
GTGCCGCTGGGCGAAGGTGCGGAGGAGGGCTTGCACGTCGAACTGCTGCTGCGCCTGCGCGACGAGGGCGGG 
CGCCTGGTGCCGCCGCTGAGCTTCATACCCGCCGCCGAGCGCTACGGCCTGATGACGCTGATCGATCGCTGG 
GTGGTGGAGAATGCCTTCCGCACCCTCGTCGAGCGCGCCCAGGACCCTCGCGCCGAGCCGATCGGCACCTGC 
GCCATCAACCTCTCCGGCGCGACCATCGGCGACGAGTCGTTCCTGCAGTTCCTCACCGAGCTGTTCGCCCGT 
TACCGCATTCCGCCGCAGACGATCTGCTTCGAGGTCACCGAAACCGTGGCGGTTGCCAACCTGGCCAGCGCC 
ATCCGCTTCATCAACGAGCTCAAGGACACCGGTTGTCGTTTCTCCCTGGACGATTTCTGCGCCGGCATGTCG 
TCCTTCATCTACCTCAAGCACCTGCCGGTGGATTACCTGAAGATCGATGGCAGCTTCGTCAAGGACATGCTC 
GAGGATCCCATCGATCGCGCCATGGTCCAGGTGATCAACCATATCGGCCACGTGATGGGCAAACGTACCATC 
GCCGAGTTCGTCGAAACCGTCGAAGTGATGGAGGCGCTGCGCGAGATCGGCATCGACTATGCCCAGGGCCTG 
GCCATCGGCGCGCCCCTGCCGTTCAGTCGCCAGCCTCCGGGCGCAGGGCTGGATGCCCAGGGCCTGTGGCCG 
AGCCTCGGACAGAACCTCCGGTAG