ViewGene
Locus Name:
GeneID:
Location:

GeneID:2399
TrivialName: PA14_48560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48560
PAO1 Ortholog Locus:PA1218
Sequence Length:879
Protein Length:292
Start: 4317948
Stop: 4318826
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04607.1|AE004551_11 (AE004551) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 292/292 (100%), Positives = 292/292 (100%)
Sequence:
ATGAAACACTATCGGCAGGTGGTATCCCCGCAATTGCGCCAACAGGCGCTGGACTGGATCCTCGCCGCGGCG
CAGCGGCCGGACCCGGCGCTGGAACCGGAATTCGACATCGCCGACGACGAGCGCCGCGAGGCGAAGAAGGTG
CGCAACCTGCACCGCCACGACCCGCTCTTCTGGGACGACTGGTTCGCCCGCTCCGGGCTCGACGCGCTGGTC
CGCGACCATCTGCGCAAGCCGCGCCTGCTGCGCCACGCGGCGTTCATCAAGCGCCATGCCGACGAGTCCTAC
ATCCCGCTGCACCAGGACATCGCGCTGTGGGAGAAGCGCTACGAAAGCGCGCAGACCTTCTGGGTCGCCCTG
ACCCCATCGCGGAACGACAACGGTGGGATGTTCTATTACCCCGACGACCGCACCATCTTCCCCCACGAGTTC
GACCTCGCCTACCCGATGTTCAAGTGCATCGACCTCCAGGCCAACGGCATTTCCCGCGAGCAACTGGTGGAT
GCCGAGCTGGACGCCGGCGACGTCCTGGTCTGGCCCGCCCGCACCGCACATGGCAGCCACAACAACCGCAGC
GGCCAGCTGCGCATCGGCATGCCGATCGTCTTCGTCGAGGACGACGAATTCCACCAACTGAATCGAGAGGAC
AGCATGAAAACCTGGATCGCTTCCAACCTGAAAAGCGTGTTCCCGGACGAGGCAATCACCGAGGACAACCTC
GACCACTATCTTCCGCAGCTGTGCGACTACTCGCTGAAGATGGTCACCTTCCTCGCCCGTTTCTCCCGCCAG
TTCGGTCATGCGCCGAAGATCCACGACTTCATCAGGGAGCCGCGGCTGGCGACGCTGTCGGCCTCGGACGCG
GGAGCGAGACGATGA
Translation:
MKHYRQVVSPQLRQQALDWILAAAQRPDPALEPEFDIADDERREAKKVRNLHRHDPLFWDDWFARSGLDALV
RDHLRKPRLLRHAAFIKRHADESYIPLHQDIALWEKRYESAQTFWVALTPSRNDNGGMFYYPDDRTIFPHEF
DLAYPMFKCIDLQANGISREQLVDAELDAGDVLVWPARTAHGSHNNRSGQLRIGMPIVFVEDDEFHQLNRED
SMKTWIASNLKSVFPDEAITEDNLDHYLPQLCDYSLKMVTFLARFSRQFGHAPKIHDFIREPRLATLSASDA
GARR*
AnnotationID:2407GeneID:2399
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 06:06:28
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1218
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4801




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21947




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37553




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2399_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2399
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4050
                           PA1218_tr
                           translation of PA1218
                           292
                           99.99
                           99.99
                           0
                           1567.0
     

     
     
121673
                           gb|AAG04607.1|AE004551_11
                           (AE004551) hypothetical protein PA1218 [Pseudomonas aeruginosa PAO1]
                           292
                           99.99
                           99.99
                           0
                           1567.0
     

     






      

          
GC ORFID: 45401How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1218Glimmer Score: 

          
Start: 635960Stop: 635082

          
Length: 879


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1218 translation of PA1218Homolog Bit Score 608.0

          
Other Homologs:  t_PA1218 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACACTATCGGCAGGTGGTATCCCCGCAATTGCGCCAACAGGCGCTGGACTGGATCCTCGCCGCGGCG 
CAGCGGCCGGACCCGGCGCTGGAACCGGAATTCGACATCGCCGACGACGAGCGCCGCGAGGCGAAGAAGGTG 
CGCAACCTGCACCGCCACGACCCGCTCTTCTGGGACGACTGGTTCGCCCGCTCCGGGCTCGACGCGCTGGTC 
CGCGACCATCTGCGCAAGCCGCGCCTGCTGCGCCACGCGGCGTTCATCAAGCGCCATGCCGACGAGTCCTAC 
ATCCCGCTGCACCAGGACATCGCGCTGTGGGAGAAGCGCTACGAAAGCGCGCAGACCTTCTGGGTCGCCCTG 
ACCCCATCGCGGAACGACAACGGTGGGATGTTCTATTACCCCGACGACCGCACCATCTTCCCCCACGAGTTC 
GACCTCGCCTACCCGATGTTCAAGTGCATCGACCTCCAGGCCAACGGCATTTCCCGCGAGCAACTGGTGGAT 
GCCGAGCTGGACGCCGGCGACGTCCTGGTCTGGCCCGCCCGCACCGCACATGGCAGCCACAACAACCGCAGC 
GGCCAGCTGCGCATCGGCATGCCGATCGTCTTCGTCGAGGACGACGAATTCCACCAACTGAATCGAGAGGAC 
AGCATGAAAACCTGGATCGCTTCCAACCTGAAAAGCGTGTTCCCGGACGAGGCAATCACCGAGGACAACCTC 
GACCACTATCTTCCGCAGCTGTGCGACTACTCGCTGAAGATGGTCACCTTCCTCGCCCGTTTCTCCCGCCAG 
TTCGGTCATGCGCCGAAGATCCACGACTTCATCAGGGAGCCGCGGCTGGCGACGCTGTCGGCCTCGGACGCG 
GGAGCGAGACGATGA