ViewGene
Locus Name:
GeneID:
Location:

GeneID:2395
TrivialName: PA14_21040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21040
PAO1 Ortholog Locus:PA3325
Sequence Length:888
Protein Length:295
Start: 1818994
Stop: 1818107
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06713.1|AE004754_9 (AE004754) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 294/295 (99%), Positives = 294/295 (99%)
Sequence:
ATGAGCGAATTCCACCACAAGCTGGTCCAGCGCAAGGTCCGCTTCGACTTCAGCGATACCCCCCTGCACTGG
GTTCCCGGCGAAGCGGAAGCGTCCCAGGTGATGAACGTCCTGCACATGCTCCTGCCTTCGGGCGAACTGTGG
TTCTGCCGCCTCTACAACAAGGCCCTGCCGCTGGTTAGCGACGCCCGCCTGCGCGACGACGTGCAGGGTTTC
ATCCGCCAGGAAGCGATGCATTCGCGGGCCCACGACGGCGCGATCCAGCGCTACCTGAGCAGGTTCGACATC
GACTCCAAGCCGTTCACCGACAAGATGGATTTCCTTTTCGAACGCCTGCTCTGCGACTACCCGCTGGGGCAG
AACCGCCTGACCCGCGCCCTCGACGGCTGGTGGCTGCGCCAGCGCTGCGCGATCATCGCCGCGGTGGAGCAT
TTCACCTGCGTGCTCGGCAAGTGGGTGCTGGAGGCCCGGGAGCTGGATCGCCGCGGCAGCGACCCGGTGATG
CTCGACCTGCTGCGCTGGCACGGCGCCGAGGAAGTCGAGCACCGCAGCGTCGCCCACGACCTGCACGTGCAC
CTGGGCGGCAGCTTCGTCACCCGGCAACTGACCATGCTGTTGGTCATCGCGATACTGGTCTACCTGCTCGCC
GACGGCACCCGCACCCTCCTCGACCAGGACCCGAGCCTGCGCGGCGCCAAGCGCCAGGGATTCCTACGAACC
TGGTGGCGGCTCGGCAAGCAGGGCCTGCTGCCGAACCTCGCGCACACCTTCCGCGACGTCGCCCGCTACTTC
AATCCCTGGTACCACCCCGAGCACGAGGCGAATACCCAGGAAGCCCTGGAATACCTGGCCAACTCGCCGGCG
GCCCGGCGCGCGGCGAACGCCTGA
Translation:
MSEFHHKLVQRKVRFDFSDTPLHWVPGEAEASQVMNVLHMLLPSGELWFCRLYNKALPLVSDARLRDDVQGF
IRQEAMHSRAHDGAIQRYLSRFDIDSKPFTDKMDFLFERLLCDYPLGQNRLTRALDGWWLRQRCAIIAAVEH
FTCVLGKWVLEARELDRRGSDPVMLDLLRWHGAEEVEHRSVAHDLHVHLGGSFVTRQLTMLLVIAILVYLLA
DGTRTLLDQDPSLRGAKRQGFLRTWWRLGKQGLLPNLAHTFRDVARYFNPWYHPEHEANTQEALEYLANSPA
ARRAANA*
AnnotationID:2403GeneID:2395
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:10
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA3325
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3687
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3687, Predicted metal-dependent hydrolase
CD-Length = 280 residues,  98.6% aligned
Score =  331 bits (849), Expect = 7e-92
Identities = 137/295 (46%), Positives = 177/295 (60%), Gaps = 22/295 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4793




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21939




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32238




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2395_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2395
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4046
                           PA3325_tr
                           translation of PA3325
                           295
                           99.66
                           99.66
                           0
                           1571.0
     

     
     
121465
                           gb|AAG06713.1|AE004754_9
                           (AE004754) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           295
                           99.66
                           99.66
                           0
                           1571.0
     

     
     
121466
                           emb|CAB90869.1|
                           (AL939111) conserved hypothetical protein SC10B7.16 [Streptomyces coelicolor A3(2)]
                           303
                           48.84
                           62.04
                           15
                           727.0
     

     
     
121467
                           dbj|BAC67864.1|
                           (AP005021) hypothetical protein [Streptomyces avermitilis MA-4680]
                           310
                           46.12
                           58.38
                           22
                           659.0
     

     
     
121468
                           dbj|BAC71965.1|
                           (AP005038) hypothetical protein [Streptomyces avermitilis MA-4680]
                           315
                           44.12
                           57.77
                           26
                           646.0
     

     






      

          
GC ORFID: 45397How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3325Glimmer Score: 

          
Start: 3134938Stop: 3135825

          
Length: 888


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3325 translation of PA3325Homolog Bit Score 609.0

          
Other Homologs:  t_PA3325 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAATTCCACCACAAGCTGGTCCAGCGCAAGGTCCGCTTCGACTTCAGCGATACCCCCCTGCACTGG 
GTTCCCGGCGAAGCGGAAGCGTCCCAGGTGATGAACGTCCTGCACATGCTCCTGCCTTCGGGCGAACTGTGG 
TTCTGCCGCCTCTACAACAAGGCCCTGCCGCTGGTTAGCGACGCCCGCCTGCGCGACGACGTGCAGGGTTTC 
ATCCGCCAGGAAGCGATGCATTCGCGGGCCCACGACGGCGCGATCCAGCGCTACCTGAGCAGGTTCGACATC 
GACTCCAAGCCGTTCACCGACAAGATGGATTTCCTTTTCGAACGCCTGCTCTGCGACTACCCGCTGGGGCAG 
AACCGCCTGACCCGCGCCCTCGACGGCTGGTGGCTGCGCCAGCGCTGCGCGATCATCGCCGCGGTGGAGCAT 
TTCACCTGCGTGCTCGGCAAGTGGGTGCTGGAGGCCCGGGAGCTGGATCGCCGCGGCAGCGACCCGGTGATG 
CTCGACCTGCTGCGCTGGCACGGCGCCGAGGAAGTCGAGCACCGCAGCGTCGCCCACGACCTGCACGTGCAC 
CTGGGCGGCAGCTTCGTCACCCGGCAACTGACCATGCTGTTGGTCATCGCGATACTGGTCTACCTGCTCGCC 
GACGGCACCCGCACCCTCCTCGACCAGGACCCGAGCCTGCGCGGCGCCAAGCGCCAGGGATTCCTACGAACC 
TGGTGGCGGCTCGGCAAGCAGGGCCTGCTGCCGAACCTCGCGCACACCTTCCGCGACGTCGCCCGCTACTTC 
AATCCCTGGTACCACCCCGAGCACGAGGCGAATACCCAGGAAGCCCTGGAATACCTGGCCAACTCGCCGGCG 
GCCCGGCGCGCGGCGAACGCCTGA