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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG05805.1|AE004669_2 (AE004669) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 311/312 (99%), Positives = 311/312 (99%)
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Sequence:
ATGAGTGGTGAGCTGGTGTTCGATCTGAACGCGCTTTTCATCTATGCCAAGGTGGTCGAGCACGGTGGCTTC
GCCCCCGCCGGGCGGGTGCTGGGGATTCCCAAGTCGACCATCAGCCGCAAGGTCGCGCAGCTCGAGGCGCGC
CTGGGCGTACGCCTGGTGCAGCGCTCGACGCGGCAATTCCAGGTGACCGAGATCGGCCAGGCCTATTACCGT
CATTGCGTGGCGATGACGGTGGAAGCGGAGGCTGCCGAGGACGTCATCGAACAGAACCGCTCGGAGCCGTGC
GGAATGGTCCGCCTGACCTGCTCGACGCCGCTGCTGCACTTCGAACTGGCGCCGATGCTGGCGCGCTTCATG
GCGCAGTATCCGAACGTCGAGCTGTACGTGAAGACCTTCAATCGCCGGGTCGACGTGATCGCCGAAGGCTAC
GACATCTCGCTGTCGCTGCGTTTCCCGCCGCTGGAGGACAGCGACCTGGTGATGAAGGTGCTGGCACGCAGT
CCGCAGGTGCTGGTGGCCAGCCCGGAGCTGCTGGCCCGCTACCGCCCGCCGGAGCTGCCGGCCGACCTGTCG
GCGATGCCCTACGTCGGCTGGGAGCGTTCGCGCCTGGACGGCAGCCTGCGGCTGGTCGGCGCGGATGGCAGC
AGCGCGGCCCTCAACCTGCGCCCGCAACTGCTCAGCGACGACCTCGGCACCTTGCGCCAGGCGGTGCTGGAG
GGCGTCGGGATCGGCGGCCTGCCGCTCTGCGTGGTCAGTCGCGACCTGGCCGAGCGCCGGCTGGTGCGGGTG
CTGCCGGAGTGGACGCCGGTGGAAGGCATGGTGGTGGCAATGTTCCCTTCGCGGCGCGGGCTGTTGCCTTCG
GTCCGCGCGCTGATCGACTTTCTCGCCGCAGGCTTCGCCGACGCCGCGCAGCGCCAGTACCCGGCGCCGGGC
TGA |
Translation:
MSGELVFDLNALFIYAKVVEHGGFAPAGRVLGIPKSTISRKVAQLEARLGVRLVQRSTRQFQVTEIGQAYYR
HCVAMTVEAEAAEDVIEQNRSEPCGMVRLTCSTPLLHFELAPMLARFMAQYPNVELYVKTFNRRVDVIAEGY
DISLSLRFPPLEDSDLVMKVLARSPQVLVASPELLARYRPPELPADLSAMPYVGWERSRLDGSLRLVGADGS
SAALNLRPQLLSDDLGTLRQAVLEGVGIGGLPLCVVSRDLAERRLVRVLPEWTPVEGMVVAMFPSRRGLLPS
VRALIDFLAAGFADAAQRQYPAPG* |
AnnotationID:2402 | GeneID:2394 |
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Modification Date/Time: |
2005-03-06 11:11:29 |
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GeneProduct: | putative transcriptional regulator, LysR family |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (25) Transcriptional regulators |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN70814.1|AE016725_7 (AE016793) transcriptional regulator, LysR family [Pseudomonas
putida KT2440]
Length = 303
Score = 301 bits (770), Expect = 4e-81
Identities = 155/296 (52%), Positives = 212/296 (71%), Gaps = 2/296 (0%)
>emb|CAE33320.1| (BX640445) LysR-family transcriptional regulator [Bordetella
bronchiseptica]
Length = 301
Score = 299 bits (766), Expect = 1e-80
Identities = 155/294 (52%), Positives = 201/294 (68%)
>emb|CAD17813.1| (AL646080) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
solanacearum]
Length = 297
Score = 293 bits (751), Expect = 7e-79
Identities = 150/290 (51%), Positives = 203/290 (70%), Gaps = 1/290 (0%)
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Structural Features: | COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score = 138 bits (349), Expect = 6e-34
Identities = 98/305 (32%), Positives = 144/305 (47%), Gaps = 13/305 (4%)
pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score = 103 bits (259), Expect = 2e-23
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