Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAG05083.1| AE004596_9 (AE004596) translocation protein in type III secretion [Pseudomonas aeruginosa PAO1]
Identities = 305/309 (98%), Positives = 306/309 (99%)
Sequence:
ATGAACGGTGCGGACCTCGACCTGCCGCTCGCCAGCCGCGCCGAACTGGATCTCCAGCGACGTCTCGCACGT
TGCCGTCGCCACTATGTCGGCAACGCTTTGCAAGCGCGCCTGGACATCGCCCAGGCCGCCCCCGACGTCGAT
CTCGAACTGAGCCTGGCGTGGGACGGCCTGCCCCTGCGCTTTCTCTGCCAGGCCCCGGCGCTGGCCCGCTGG
CTCGCGCCGAACCTGCAGGAGGCAGCCTTCGCCAGCCTGCCGGCGGCCCTGCAACTGGCCTTGCTGGAGCGC
GAAGGCAACGTCTTTCCCGGCCTGGTCTGGTACGGCCTGAGCCCGGCGCAACCACGCGCTGCGATGGGCCTG
CGCCTGAGCCTGGAACGCGACGACCAGCGCCTGGCGCTCTGGCTCGACGGCGATCCCGCGACGCTGCTGGCA
CGCCTGCCGCCGCGCCCCTCGGCGCAACGCCTGGCCATACCGCTGCGCCTGTCGCTGCAATGGCCCGGCCTG
CCGCTGGAGGCCGGCGAGCTGCGCACCCTGGAGCCCGGCGACCTGTTGCTGCTGCCTGCCGGCCATCGCCCC
GACGCAGCGCTGCTGGGGGTTCTCGAAGGACGCCCCTGGGCGCGCTGCCAACTCCACTCCACGCAACTGGAA
CTGCTCGACATGCACGACACCCCCTCCCTCGCCGACAGCGAGGACCTGCACGAACTCGACCAACTGCCGATC
CCGGTCAGCTTCGAGGTCGGCCGCCGCACCCTGGACCTGCATACCCTCTCGACCCTGCAGCCAGGCTCGCTG
CTCGATCTCGACTGTGCCCTGGACGGCGAAGTGCGCATCCTCGCCAACCAGCGCTGCCTCGGTATCGGCGAA
CTGGTGAGGCTCCAGGACCGGCTCGGGGTGCGCGTAACCCGTCTGTTCGGACACGACGAAGCATGA
Translation:
MNGADLDLPLASRAELDLQRRLARCRRHYVGNALQARLDIAQAAPDVDLELSLAWDGLPLRFLCQAPALARW
LAPNLQEAAFASLPAALQLALLEREGNVFPGLVWYGLSPAQPRAAMGLRLSLERDDQRLALWLDGDPATLLA
RLPPRPSAQRLAIPLRLSLQWPGLPLEAGELRTLEPGDLLLLPAGHRPDAALLGVLEGRPWARCQLHSTQLE
LLDMHDTPSLADSEDLHELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGE
LVRLQDRLGVRVTRLFGHDEA*
AnnotationID:2400 GeneID:2392
Modification Date/Time:
2005-02-28 06:06:27
GeneProduct: translocation protein in type III secretion
Cell Localization Confidence Code: 5
Functional Category: (19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: >gb|AAO18041.1| (AY144116) LscQ [Photorhabdus luminescens]
Length = 309
Score = 248 bits (634), Expect = 2e-65
Identities = 147/303 (48%), Positives = 183/303 (60%), Gaps = 6/303 (1%)
>gb|AAN37558.1| (AY150843) YscQ [Yersinia enterocolitica]
Length = 307
Score = 217 bits (552), Expect = 8e-56
Identities = 124/299 (41%), Positives = 177/299 (59%), Gaps = 2/299 (0%)
>gb|AAC69788.1| (AF074612) type III secretion protein [Yersinia pestis KIM]
Length = 307
Score = 211 bits (538), Expect = 3e-54
Identities = 122/299 (40%), Positives = 175/299 (58%), Gaps = 2/299 (0%)
Structural Features: COG1886 , FliN, Flagellar motor switch/type III secretory pathway protein
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 136 residues, 100.0% aligned
Score = 89.3 bits (221), Expect = 5e-19
Identities = 39/165 (23%), Positives = 58/165 (35%), Gaps = 29/165 (17%)
pfam01052 , SpoA, Surface presentation of antigens (SPOA) protein.
CD-Length = 77 residues, 100.0% aligned
Score = 72.1 bits (177), Expect = 8e-14
Identities = 31/77 (40%), Positives = 42/77 (54%)