ViewGene

Locus Name:
GeneID:
Location:

GeneID:2390
TrivialName: PA14_01730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01730
PAO1 Ortholog Locus:PA0141
Sequence Length:897
Protein Length:298
Start: 159413
Stop: 158517
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03531.1|AE004452_3 (AE004452) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 296/298 (99%), Positives = 298/298 (100%)
Sequence:
GTGGCCCTGCAGGTCGCCAGCGCGCCCCACGGCAGCAGCGAGGACAGCACCTCGGCGAGCCTGCCGGCGAAC
TATCCTTATCACACGCGGATGCGCCGCAACGAGTACGAGAAAGCCAAGCACGACCTGCAGATCGAACTGCTC
AAGGTGCAGAGCTGGGTGAAGGAGACCGGCCAGCGCGTGGTGGTCCTGTTCGAAGGCCGCGACGCCGCCGGC
AAGGGCGGTACCATCAAGCGCTTCATGGAGCACCTGAACCCGCGCGGCGCGCGGATCGTAGCCCTGGAGAAA
CCCTCCTCCCAGGAGCAGGGCCAGTGGTATTTCCAGCGCTACATCCAGCACCTGCCCACCGCCGGCGAGATG
GTCTTCTTCGACCGCTCCTGGTACAACCGCGCCGGCGTCGAGCGGGTCATGGGCTTCTGTTCGCCACTGCAA
TACCTGGAGTTCATGCGCCAGGCCCCCGAGCTGGAGCGCATGCTGAGCAACAGCGGCATCCTGCTGTTCAAG
TACTGGTTCTCGGTGAGCCGCGAGGAGCAACTGCGGCGCTTCATCTCGCGCCGCGACGATCCGCTCAAGCAC
TGGAAGCTGTCGCCCATCGACATCAAGTCTCTGGACAAGTGGGACGACTACACCGCCGCCAAGCAGGCGATG
TTCTTCCATACCGACACCGCCGACGCGCCGTGGACGGTCATCAAGTCCGACGACAAGAAGCGCGCACGACTC
AACTGCATCCGCCACTTCCTGCACGCGCTGGACTACCCGGACAAGGACCGGCGCATCGCCCATGAGCCCGAC
CCGTTGCTGGTGGGGCCGGCCTCGCGGGTGATCGAGGAGGACGAGAAGGTCTACGCCGAGGCGGCCGCCGCG
CCGGGCCACGCGAACCTGGATATCCCGGCCTGA
Translation:
MALQVASAPHGSSEDSTSASLPANYPYHTRMRRNEYEKAKHDLQIELLKVQSWVKETGQRVVVLFEGRDAAG
KGGTIKRFMEHLNPRGARIVALEKPSSQEQGQWYFQRYIQHLPTAGEMVFFDRSWYNRAGVERVMGFCSPLQ
YLEFMRQAPELERMLSNSGILLFKYWFSVSREEQLRRFISRRDDPLKHWKLSPIDIKSLDKWDDYTAAKQAM
FFHTDTADAPWTVIKSDDKKRARLNCIRHFLHALDYPDKDRRIAHEPDPLLVGPASRVIEEDEKVYAEAAAA
PGHANLDIPA*
AnnotationID:2398GeneID:2390
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 06:06:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0141
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:14575
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21929
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33510
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2390_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2390

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4036 PA0141_tr translation of PA0141 298 99.32 99.99 0 1574.0
121360 gb|AAG03531.1|AE004452_3 (AE004452) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 298 98.99 99.99 0 1571.0
121359 gb|AAN87337.1| (AY168003) polyphosphate kinase 2 [Pseudomonas aeruginosa] 357 82.91 83.47 59 1574.0
121361 gb|AAQ59395.1| (AE016916) probable UDP-galactose-lipid carrier transferase [Chromobacterium violaceum ATCC 12472] 298 75.83 83.89 15 1229.0
121365 emb|CAE50547.1| (BX248359) Conserved hypothetical protein [Corynebacterium diphtheriae] 327 50.45 62.38 58 874.0
GC ORFID: 45392How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0141Glimmer Score:
Start: 5960752Stop: 5959856
Length: 897
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0141 translation of PA0141Homolog Bit Score 610.0
Other Homologs: t_PA2428 (ORF: BLASTX 287.0), t_PA0141 (ORF: GLIMMER)
GC ORF Sequence
GTGGCCCTGCAGGTCGCCAGCGCGCCCCACGGCAGCAGCGAGGACAGCACCTCGGCGAGCCTGCCGGCGAAC
TATCCTTATCACACGCGGATGCGCCGCAACGAGTACGAGAAAGCCAAGCACGACCTGCAGATCGAACTGCTC
AAGGTGCAGAGCTGGGTGAAGGAGACCGGCCAGCGCGTGGTGGTCCTGTTCGAAGGCCGCGACGCCGCCGGC
AAGGGCGGTACCATCAAGCGCTTCATGGAGCACCTGAACCCGCGCGGCGCGCGGATCGTAGCCCTGGAGAAA
CCCTCCTCCCAGGAGCAGGGCCAGTGGTATTTCCAGCGCTACATCCAGCACCTGCCCACCGCCGGCGAGATG
GTCTTCTTCGACCGCTCCTGGTACAACCGCGCCGGCGTCGAGCGGGTCATGGGCTTCTGTTCGCCACTGCAA
TACCTGGAGTTCATGCGCCAGGCCCCCGAGCTGGAGCGCATGCTGAGCAACAGCGGCATCCTGCTGTTCAAG
TACTGGTTCTCGGTGAGCCGCGAGGAGCAACTGCGGCGCTTCATCTCGCGCCGCGACGATCCGCTCAAGCAC
TGGAAGCTGTCGCCCATCGACATCAAGTCTCTGGACAAGTGGGACGACTACACCGCCGCCAAGCAGGCGATG
TTCTTCCATACCGACACCGCCGACGCGCCGTGGACGGTCATCAAGTCCGACGACAAGAAGCGCGCACGACTC
AACTGCATCCGCCACTTCCTGCACGCGCTGGACTACCCGGACAAGGACCGGCGCATCGCCCATGAGCCCGAC
CCGTTGCTGGTGGGGCCGGCCTCGCGGGTGATCGAGGAGGACGAGAAGGTCTACGCCGAGGCGGCCGCCGCG
CCGGGCCACGCGAACCTGGATATCCCGGCCTGA