ViewGene
Locus Name:
GeneID:
Location:

GeneID:239
TrivialName: PA14_25480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25480
PAO1 Ortholog Locus:PA2984
Sequence Length:2226
Protein Length:741
Start: 2226281
Stop: 2228506
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06372.1|AE004724_1 (AE004724) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 737/741 (99%), Positives = 737/741 (99%)
Sequence:
ATGCGCCTGGGATTGCCAGCCCTCGCCGCGGGGCTGCTGGCCCTGCGCTTCCTGGCGGAATTGCCGTCGGTC
GGCTGGCTGCTGGGCATGGCCGCCGCCGGACTGTTGCTGCTGTTCGGCCGGCTGTACTGGCTGGGGTTGTTC
CTGCTCGGGTTCGCCTGGGCCTGCGGCTCGGCGCAAGTCGCCCTGGACGGACGCCTGGCCGCCGAGCTGGAT
GGTCGCACCCTTTGGCTGGAGGGGCGTGTGGTCGATCTGCCGGCGAGCGGCGAGGGCGTCACGCGCTTCCGG
CTGGAGGAGGTCAGCGCTGCGCGGGGCGTGCTTCTTCCCGAGCGTCTGCGCCTGAGCTGGCGCGGCGCGCCG
CCGCTGATGGGCGGCGAACGCTGGCGCCTGGCGGTGACCCTGAAACGCCCCCGCGGCCTGGTGAACGCGGCG
GGTTTCGACTACGAGGCCTGGTTGTTGGCGCAGCGGGTCGGTGCTGTGGGCAAGGTGAAGGCGGGCCAACGC
CTGCAGCCGGCCAGCGGCCTGGATGCCTGGCGCGATGCCTGGCGCCAGCGCCTGCTGGCGGTCGACGCACAG
GGGCGCGGCGCCGCCCTGGCGGCGCTGGTGCTGGGGGATGGCTCGGGATTGAGCGCGGCCGAGTGGCGAATG
TTCCAGGACACCGGCACCGTGCATCTGATGGTCATCTCCGGTTCGCATATCTCGTTGCTGGCGGGGATGCTC
TATGGCCTGGTGGCGGCCTTGCATCGCCTGGGCTGCTGGCCGCGGCGCCTGCCCTGGCTGCCCTGTGCCTGC
GCCCTGGGTTTGCTTGGTGCCTGGAGCTACGGGTTGATGGCGGGTTTCGAGGTCCCGGTGCGGCGTGCTTGC
CTGATGGTCAGCCTGGCGCTGGTCTGGCGCCTGCGTTTCCGCCACCTGGGCTTGCTGACCCCGCTGCTGGCA
ACGCTGGTGCTGGTCTTGCTGGTCGAGCCGCTGGCCAGCCTGCAGGCGGGGTTCTGGCTGTCGTTCCTGGCG
GTTGCCCTGCTGCTCTGGCTGTTCGCCGGGCGCCTTGGGCGCTGGCGCTGGTGGGCGGCCTGGGGGCGGGCG
CAGTGGGGGATGGCGCTGGGGCTGGCGATGCCGCTGCTGGCGCTGGGCCTGCCGTTGAGCCTGAGCGGAGCG
CCGGCCAACCTGCTGGCGGTGCCTTGGATCGAACTGCTGGTAGTGCCCCCGGCCCTGGCGGGGAGCCTGCTG
CTATGGGTGCCCGGGCTGGGCGAGGGGCTGCTTCGCGCCGCTGGCGTTTCGCTGGACCTGCTGTTTCGTGCG
CTTGGCCTGCTGGCGGGCCTGGCCGAGGCCTGGCAGCCACCCGCCGCAGCGGCCTGGAGCGTAGCGCTGGGC
ATGCTCGGCGCGCTCTGCTGGCTGGCGCCGGCTGGCTTGCCGTTGCGTGCCCTCGGTGCCGCGTTGCTACTG
CCGGCGTTGTTGCCGTCATCGCCGCCTGTCGAATGGGGGCGGGCGGAAGTGCGGGTGCTGGACGTCGGCCAG
GGGCTGGCCGTGCTGGTGCGTACCCGGGAGCATGCCTTGCTCTATGACAGCGGTGCGCGGCAGGGGGCGTTC
GACATGGGCGAGCGGGTGGTGGTGCCGGTGCTGCGCAGCCTGGACCTGCGGCGCCTGGACGGCCTGTTGCTG
AGCCATGCCGACAACGACCATGCAGGCGGTGCTCCTACGGTCGCTTCCCGATTCCCGCCGGGTTGGCTGGTC
AGCGGCGAACCCGCGCGCCTGCCTTCGCCGTTGTTCGCGGACAGCTGCGACGAGCGGAGCTGGTCCTGGGAT
GGCGTGGTTTTCGAACAGTGGGCATGGGCGCAGGCCGGCGACAGCAACGACCGCTCCTGTGTGCTGAGGGTC
GAGGCCGATGGCGAAGTCCTGCTGCTGACCGGGGACATCTCGCGTGCGGCCGAGCATGCCTGGCTGGCGCGA
CAGGCCGATCCCCGGGTCGACTGGTTGCTGGCGCCGCATCATGGCAGCCGCAGTTCCTCCGGAGTCGCCTTC
GTGTTGCGTACGCGACCTCGCCATGTGCTGGTCTCGCGAGGTTGGCGCAACGCCTTCGGCCATCCCCATGGC
GAAGTGATGGAGCGTTACGCGAGGGTCGCCGCGCAGGTCCACGACACGGCACGCGACGGTGCCCTGACGTTT
TTCCTCGGAAGCCGTGGCGGCGCACGCCGGGAGCGTGATTCGGCGCACTTCTGGCGGGAAAAATGA
Translation:
MRLGLPALAAGLLALRFLAELPSVGWLLGMAAAGLLLLFGRLYWLGLFLLGFAWACGSAQVALDGRLAAELD
GRTLWLEGRVVDLPASGEGVTRFRLEEVSAARGVLLPERLRLSWRGAPPLMGGERWRLAVTLKRPRGLVNAA
GFDYEAWLLAQRVGAVGKVKAGQRLQPASGLDAWRDAWRQRLLAVDAQGRGAALAALVLGDGSGLSAAEWRM
FQDTGTVHLMVISGSHISLLAGMLYGLVAALHRLGCWPRRLPWLPCACALGLLGAWSYGLMAGFEVPVRRAC
LMVSLALVWRLRFRHLGLLTPLLATLVLVLLVEPLASLQAGFWLSFLAVALLLWLFAGRLGRWRWWAAWGRA
QWGMALGLAMPLLALGLPLSLSGAPANLLAVPWIELLVVPPALAGSLLLWVPGLGEGLLRAAGVSLDLLFRA
LGLLAGLAEAWQPPAAAAWSVALGMLGALCWLAPAGLPLRALGAALLLPALLPSSPPVEWGRAEVRVLDVGQ
GLAVLVRTREHALLYDSGARQGAFDMGERVVVPVLRSLDLRRLDGLLLSHADNDHAGGAPTVASRFPPGWLV
SGEPARLPSPLFADSCDERSWSWDGVVFEQWAWAQAGDSNDRSCVLRVEADGEVLLLTGDISRAAEHAWLAR
QADPRVDWLLAPHHGSRSSSGVAFVLRTRPRHVLVSRGWRNAFGHPHGEVMERYARVAAQVHDTARDGALTF
FLGSRGGARRERDSAHFWREK*
AnnotationID:249GeneID:239
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 09:09:54
Gene Name:
Confidence Code:3
GeneProduct:putative competence protein
Cell Localization:()
Synonyms:PA2984
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2333,COG0658,pfam03772
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB50917.1| (AJ243354) competence protein [Pseudomonas stutzeri]
          Length = 741

 Score =  844 bits (2180), Expect = 0.0
 Identities = 440/742 (59%), Positives = 513/742 (69%), Gaps = 2/742 (0%)

>gb|AAO57315.1| (AE016869) DNA internalization-related competence protein
           ComEC/Rec2 [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 738

 Score =  803 bits (2075), Expect = 0.0
 Identities = 424/741 (57%), Positives = 503/741 (67%), Gaps = 4/741 (0%)

>gb|AAN67516.1|AE016380_4 (AE016781) DNA internalization-related competence protein
           ComEC/Rec2 [Pseudomonas putida KT2440]
          Length = 737

 Score =  793 bits (2049), Expect = 0.0
 Identities = 426/739 (57%), Positives = 504/739 (68%), Gaps = 6/739 (0%)








 
Structural Features:
COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily)
CD-Length = 293 residues,  98.3% aligned
Score =  238 bits (608), Expect = 2e-63
Identities = 95/298 (31%), Positives = 139/298 (46%), Gaps = 16/298 (5%)

COG0658, ComEC, Predicted membrane metal-binding protein
CD-Length = 453 residues,  92.9% aligned
Score =  161 bits (407), Expect = 4e-40
Identities = 139/429 (32%), Positives = 185/429 (43%), Gaps = 29/429 (6%)

pfam03772, Competence, Competence protein.
CD-Length = 261 residues, 100.0% aligned
Score =  172 bits (437), Expect = 1e-43
Identities = 110/271 (40%), Positives = 136/271 (50%), Gaps = 12/271 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:481




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17623




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36069




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:239_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:239
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
406
                           PA2984_tr
                           translation of PA2984
                           741
                           99.46
                           99.46
                           0
                           3849.0
     

     
     
22912
                           gb|AAG06372.1|AE004724_1
                           (AE004724) hypothetical protein PA2984 [Pseudomonas aeruginosa PAO1]
                           741
                           99.46
                           99.46
                           0
                           3849.0
     

     
     
22913
                           emb|CAB50917.1|
                           (AJ243354) competence protein [Pseudomonas stutzeri]
                           743
                           59.62
                           69.44
                           4
                           2187.0
     

     
     
22915
                           gb|AAN67516.1|AE016380_4
                           (AE016781) DNA internalization-related competence protein ComEC/Rec2 [Pseudomonas putida KT2440]
                           743
                           57.33
                           67.96
                           8
                           2059.0
     

     
     
22914
                           gb|AAO57315.1|
                           (AE016869) DNA internalization-related competence protein ComEC/Rec2 [Pseudomonas syringae pv. tomato str. DC3000]
                           742
                           57.14
                           67.78
                           5
                           2081.0
     

     






      

          
GC ORFID: 43241How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2984Glimmer Score: 

          
Start: 2727644Stop: 2725419

          
Length: 2226


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2984 translation of PA2984Homolog Bit Score 1487.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2174 (ORF: BLASTX 419.0), t_PA2984 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTGGGATTGCCAGCCCTCGCCGCGGGGCTGCTGGCCCTGCGCTTCCTGGCGGAATTGCCGTCGGTC 
GGCTGGCTGCTGGGCATGGCCGCCGCCGGACTGTTGCTGCTGTTCGGCCGGCTGTACTGGCTGGGGTTGTTC 
CTGCTCGGGTTCGCCTGGGCCTGCGGCTCGGCGCAAGTCGCCCTGGACGGACGCCTGGCCGCCGAGCTGGAT 
GGTCGCACCCTTTGGCTGGAGGGGCGTGTGGTCGATCTGCCGGCGAGCGGCGAGGGCGTCACGCGCTTCCGG 
CTGGAGGAGGTCAGCGCTGCGCGGGGCGTGCTTCTTCCCGAGCGTCTGCGCCTGAGCTGGCGCGGCGCGCCG 
CCGCTGATGGGCGGCGAACGCTGGCGCCTGGCGGTGACCCTGAAACGCCCCCGCGGCCTGGTGAACGCGGCG 
GGTTTCGACTACGAGGCCTGGTTGTTGGCGCAGCGGGTCGGTGCTGTGGGCAAGGTGAAGGCGGGCCAACGC 
CTGCAGCCGGCCAGCGGCCTGGATGCCTGGCGCGATGCCTGGCGCCAGCGCCTGCTGGCGGTCGACGCACAG 
GGGCGCGGCGCCGCCCTGGCGGCGCTGGTGCTGGGGGATGGCTCGGGATTGAGCGCGGCCGAGTGGCGAATG 
TTCCAGGACACCGGCACCGTGCATCTGATGGTCATCTCCGGTTCGCATATCTCGTTGCTGGCGGGGATGCTC 
TATGGCCTGGTGGCGGCCTTGCATCGCCTGGGCTGCTGGCCGCGGCGCCTGCCCTGGCTGCCCTGTGCCTGC 
GCCCTGGGTTTGCTTGGTGCCTGGAGCTACGGGTTGATGGCGGGTTTCGAGGTCCCGGTGCGGCGTGCTTGC 
CTGATGGTCAGCCTGGCGCTGGTCTGGCGCCTGCGTTTCCGCCACCTGGGCTTGCTGACCCCGCTGCTGGCA 
ACGCTGGTGCTGGTCTTGCTGGTCGAGCCGCTGGCCAGCCTGCAGGCGGGGTTCTGGCTGTCGTTCCTGGCG 
GTTGCCCTGCTGCTCTGGCTGTTCGCCGGGCGCCTTGGGCGCTGGCGCTGGTGGGCGGCCTGGGGGCGGGCG 
CAGTGGGGGATGGCGCTGGGGCTGGCGATGCCGCTGCTGGCGCTGGGCCTGCCGTTGAGCCTGAGCGGAGCG 
CCGGCCAACCTGCTGGCGGTGCCTTGGATCGAACTGCTGGTAGTGCCCCCGGCCCTGGCGGGGAGCCTGCTG 
CTATGGGTGCCCGGGCTGGGCGAGGGGCTGCTTCGCGCCGCTGGCGTTTCGCTGGACCTGCTGTTTCGTGCG 
CTTGGCCTGCTGGCGGGCCTGGCCGAGGCCTGGCAGCCACCCGCCGCAGCGGCCTGGAGCGTAGCGCTGGGC 
ATGCTCGGCGCGCTCTGCTGGCTGGCGCCGGCTGGCTTGCCGTTGCGTGCCCTCGGTGCCGCGTTGCTACTG 
CCGGCGTTGTTGCCGTCATCGCCGCCTGTCGAATGGGGGCGGGCGGAAGTGCGGGTGCTGGACGTCGGCCAG 
GGGCTGGCCGTGCTGGTGCGTACCCGGGAGCATGCCTTGCTCTATGACAGCGGTGCGCGGCAGGGGGCGTTC 
GACATGGGCGAGCGGGTGGTGGTGCCGGTGCTGCGCAGCCTGGACCTGCGGCGCCTGGACGGCCTGTTGCTG 
AGCCATGCCGACAACGACCATGCAGGCGGTGCTCCTACGGTCGCTTCCCGATTCCCGCCGGGTTGGCTGGTC 
AGCGGCGAACCCGCGCGCCTGCCTTCGCCGTTGTTCGCGGACAGCTGCGACGAGCGGAGCTGGTCCTGGGAT 
GGCGTGGTTTTCGAACAGTGGGCATGGGCGCAGGCCGGCGACAGCAACGACCGCTCCTGTGTGCTGAGGGTC 
GAGGCCGATGGCGAAGTCCTGCTGCTGACCGGGGACATCTCGCGTGCGGCCGAGCATGCCTGGCTGGCGCGA 
CAGGCCGATCCCCGGGTCGACTGGTTGCTGGCGCCGCATCATGGCAGCCGCAGTTCCTCCGGAGTCGCCTTC 
GTGTTGCGTACGCGACCTCGCCATGTGCTGGTCTCGCGAGGTTGGCGCAACGCCTTCGGCCATCCCCATGGC 
GAAGTGATGGAGCGTTACGCGAGGGTCGCCGCGCAGGTCCACGACACGGCACGCGACGGTGCCCTGACGTTT 
TTCCTCGGAAGCCGTGGCGGCGCACGCCGGGAGCGTGATTCGGCGCACTTCTGGCGGGAAAAATGA