ViewGene
Locus Name:
GeneID:
Location:

GeneID:2389
TrivialName: PA14_01380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01380
PAO1 Ortholog Locus:PA0113
Sequence Length:915
Protein Length:304
Start: 132234
Stop: 133148
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03503.1|AE004449_12 (AE004449) probable cytochrome c oxidase assembly factor [Pseudomonas aeruginosa PAO1]
Identities = 304/304 (100%), Positives = 304/304 (100%)
Sequence:
ATGGCCACCGTCATCGATCGCCACAGCCAGCCGACCTGGCGCGACTTCCTCGAACTGACCAAGCCCAAGGTC
GTGGTGCTGATGCTGATCACCTCGCTGATCGGCATGCTGCTCGCCACCAAGGCGCCGCTGGATGGCTTCGTG
CCCTGGCAGGTGCTGATCTTCGGCAACCTCGGCATCGGCCTTTGTGCCGGCGCGGCGGCGGCGGTCAACCAT
GTGGTGGACCGGCGCATCGACTCGATCATGGCGCGGACCCACAAGCGGCCGCTGGCCGAGGGCCGGGTGTCG
CCGAGCATGGCGCTGGGCTTCGCGCTGCTCCTGGCGCTGGCCGGGATGGCCGTGCTGCTGGCCTTCACCAAC
CCGCTGACGGCCTGGCTGACCCTCGCCTCGCTGCTCGGCTATGCGGCGCTCTACACCGGCTTCCTGAAGCGC
GCCACGCCGCAGAACATCGTCATCGGCGGGCTCGCCGGGGCGGCGCCGCCGCTGCTCGGCTGGGTCGCCATC
ACCGGCCACCTGAGCGCCGAGCCGCTGTTGCTGGTACTGATCATCTTCGCCTGGACCCCACCGCACTTCTGG
GCGCTATGCATCCACCGCAAGGACGAATACGCCAAGGCCGACATCCCGATGCTGCCGGTGACCCACGGCGAG
CGCTACACCAAGCTGCACATCCTGCTCTATACCCTGGTGCTGTTCGCGGTGAGCCTGATGCCGTTCGTCATC
CACATGAGCGGGCTGGTCTATCTGCTCTGCGCCCTGGCCCTGGGCGCGCGCTTCCTCGACTGGGCCTGGGCG
CTCTACTGTGACAGCCGGCCACATGCGGCGATAAAGACCTTCAAGTACTCTATCGTCTACCTGTTCCTGCTG
TTCATGGCGCTGCTGGTGGACCACTATCTGCCGCTGAAGCTGCTTCTCTGA
Translation:
MATVIDRHSQPTWRDFLELTKPKVVVLMLITSLIGMLLATKAPLDGFVPWQVLIFGNLGIGLCAGAAAAVNH
VVDRRIDSIMARTHKRPLAEGRVSPSMALGFALLLALAGMAVLLAFTNPLTAWLTLASLLGYAALYTGFLKR
ATPQNIVIGGLAGAAPPLLGWVAITGHLSAEPLLLVLIIFAWTPPHFWALCIHRKDEYAKADIPMLPVTHGE
RYTKLHILLYTLVLFAVSLMPFVIHMSGLVYLLCALALGARFLDWAWALYCDSRPHAAIKTFKYSIVYLFLL
FMALLVDHYLPLKLLL*
AnnotationID:2397GeneID:2389
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:30
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c oxidase assembly factor
Cell Localization:()
Synonyms:ctaB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative protoheme IX farnesyltransferase
Functional Category Confidence Code:5
COGs:COG0109
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:2.5.1.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65744.1|AE016200_8 (AE016774) protoheme IX farnesyltransferase [Pseudomonas putida
           KT2440]
          Length = 297

 Score =  476 bits (1226), Expect = e-134
 Identities = 240/302 (79%), Positives = 261/302 (86%), Gaps = 5/302 (1%)

>gb|AAO90517.1| (AE016963) protoheme IX farnesyltransferase [Coxiella burnetii RSA
           493]
          Length = 305

 Score =  339 bits (869), Expect = 1e-92
 Identities = 166/293 (56%), Positives = 214/293 (73%), Gaps = 4/293 (1%)

>dbj|BAC61887.1| (AP005085) putative cytochrome c oxidase assembly factor [Vibrio
           parahaemolyticus]
          Length = 302

 Score =  323 bits (829), Expect = 6e-88
 Identities = 163/287 (56%), Positives = 204/287 (71%), Gaps = 4/287 (1%)









 
Structural Features:
COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 304 residues,  95.7% aligned
Score =  314 bits (807), Expect = 6e-87
Identities = 154/295 (52%), Positives = 191/295 (64%), Gaps = 4/295 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4781




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21927




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33489




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2389_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2389
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4035
                           PA0113_tr
                           translation of PA0113
                           304
                           99.99
                           99.99
                           0
                           1572.0
     

     
     
121320
                           gb|AAG03503.1|AE004449_12
                           (AE004449) probable cytochrome c oxidase assembly factor [Pseudomonas aeruginosa PAO1]
                           304
                           99.99
                           99.99
                           0
                           1572.0
     

     
     
121321
                           gb|AAN65744.1|AE016200_8
                           (AE016774) protoheme IX farnesyltransferase [Pseudomonas putida KT2440]
                           305
                           79.01
                           86.22
                           9
                           1232.0
     

     
     
121322
                           gb|AAN57574.1|AE015893_3
                           (AE015893) protoheme IX farnesyltransferase [Shewanella oneidensis MR-1]
                           308
                           56.49
                           69.80
                           12
                           883.0
     

     
     
121323
                           gb|AAO90517.1|
                           (AE016963) protoheme IX farnesyltransferase [Coxiella burnetii RSA 493]
                           311
                           55.30
                           71.38
                           13
                           874.0
     

     






      

          
GC ORFID: 45391How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0113Glimmer Score: 

          
Start: 5933573Stop: 5934487

          
Length: 915


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0113 translation of PA0113Homolog Bit Score 610.0

          
Other Homologs:  t_PA0113 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCACCGTCATCGATCGCCACAGCCAGCCGACCTGGCGCGACTTCCTCGAACTGACCAAGCCCAAGGTC 
GTGGTGCTGATGCTGATCACCTCGCTGATCGGCATGCTGCTCGCCACCAAGGCGCCGCTGGATGGCTTCGTG 
CCCTGGCAGGTGCTGATCTTCGGCAACCTCGGCATCGGCCTTTGTGCCGGCGCGGCGGCGGCGGTCAACCAT 
GTGGTGGACCGGCGCATCGACTCGATCATGGCGCGGACCCACAAGCGGCCGCTGGCCGAGGGCCGGGTGTCG 
CCGAGCATGGCGCTGGGCTTCGCGCTGCTCCTGGCGCTGGCCGGGATGGCCGTGCTGCTGGCCTTCACCAAC 
CCGCTGACGGCCTGGCTGACCCTCGCCTCGCTGCTCGGCTATGCGGCGCTCTACACCGGCTTCCTGAAGCGC 
GCCACGCCGCAGAACATCGTCATCGGCGGGCTCGCCGGGGCGGCGCCGCCGCTGCTCGGCTGGGTCGCCATC 
ACCGGCCACCTGAGCGCCGAGCCGCTGTTGCTGGTACTGATCATCTTCGCCTGGACCCCACCGCACTTCTGG 
GCGCTATGCATCCACCGCAAGGACGAATACGCCAAGGCCGACATCCCGATGCTGCCGGTGACCCACGGCGAG 
CGCTACACCAAGCTGCACATCCTGCTCTATACCCTGGTGCTGTTCGCGGTGAGCCTGATGCCGTTCGTCATC 
CACATGAGCGGGCTGGTCTATCTGCTCTGCGCCCTGGCCCTGGGCGCGCGCTTCCTCGACTGGGCCTGGGCG 
CTCTACTGTGACAGCCGGCCACATGCGGCGATAAAGACCTTCAAGTACTCTATCGTCTACCTGTTCCTGCTG 
TTCATGGCGCTGCTGGTGGACCACTATCTGCCGCTGAAGCTGCTTCTCTGA