ViewGene
Locus Name:
GeneID:
Location:

GeneID:2388
TrivialName: PA14_68350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68350
PAO1 Ortholog Locus:PA5173
Sequence Length:933
Protein Length:310
Start: 6096963
Stop: 6097895
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08558.1|AE004930_4 (AE004930) carbamate kinase [Pseudomonas aeruginosa PAO1]
Identities = 309/310 (99%), Positives = 310/310 (100%)
Sequence:
ATGCGTATCGTCGTCGCATTGGGCGGTAATGCCCTGCTACGCCGTGGCGAACCCATGACCGCGGACAACCAG
CGGGAAAACGTGCGGATCGCCGCCGAACAGATCGCCAAGGTGGCGCCCGGCAACGAGCTGGTGATCGCCCAC
GGCAACGGCCCCCAGGTCGGCCTGCTGGCCCTCCAGGGGGCCGCCTACGACCAGGTCTCGCCCTACCCGCTG
GACGTCCTCGGCGCGGAAACCGAGGGCATGATCGGCTACATGATCGAACAGGAGATGGGCAACCTGCTGCCG
TTCGAAGTGCCGTTCGCCACCATCCTCACCCAGGTCGAGGTGGACGGTAAAGATCCGGCGTTCCAGAACCCG
ACCAAGCCGATCGGCCCGGTCTACTCCAGGGAAGAAGCCGAGCGCCTGGCCGCCGAGAAGGGCTGGAGCATC
GCCCCGGACGGCGACAAGTTCCGCCGCGTGGTGCCCAGCCCGCGGCCGAAGCGGATCTTCGAGATCCGCCCG
GTGAAGTGGCTGCTGGAGAAAGGCACCATCGTCATCTGCGCTGGCGGCGGCGGTATCCCGACCATGTACGAC
GAGGCCGGGAAGAAGCTCAGCGGCGTCGAGGCGGTGATCGACAAGGACCTCTGCTCCTCGCTGCTGGCCCAG
GAGCTGGTGGCCGACATCCTGATCATCGCCACCGACGTCGACGCGGCCTACGTCGACTGGGGCAAGCCGACC
CAGAAGGCCATCGCCCAGGCCCACCCGGACGAACTGGAGCGCCTCGGCTTCGCCGCCGGCTCCATGGGACCG
AAGGTCCAGGCCGCCATCGAGTTCGCCCGCGCCACCGGCAAGGACGCGGTGATCGGTTCGCTCGCGGACATC
GTCGCGATCACCGAGGGCAAGGCGGGAACACGGGTCAGCACGCGCAAGGCGGGCATCGAGTACCGCTGA
Translation:
MRIVVALGGNALLRRGEPMTADNQRENVRIAAEQIAKVAPGNELVIAHGNGPQVGLLALQGAAYDQVSPYPL
DVLGAETEGMIGYMIEQEMGNLLPFEVPFATILTQVEVDGKDPAFQNPTKPIGPVYSREEAERLAAEKGWSI
APDGDKFRRVVPSPRPKRIFEIRPVKWLLEKGTIVICAGGGGIPTMYDEAGKKLSGVEAVIDKDLCSSLLAQ
ELVADILIIATDVDAAYVDWGKPTQKAIAQAHPDELERLGFAAGSMGPKVQAAIEFARATGKDAVIGSLADI
VAITEGKAGTRVSTRKAGIEYR*
AnnotationID:2396GeneID:2388
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 18:06:37
Gene Name:arcC
Confidence Code:1
GeneProduct:carbamate kinase
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0549
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Arginine and proline metabolism; Glutamate metabolism;
Nitrogen metabolism
Homology:






 
Structural Features:






   
Genomic Context:
3-gene arginine deiminase cluster arcCBA,
followed by arginine/ornithine antiporter arcD






   
Comment:


















    ReferenceID:4779




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16997




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA5173_CDS.cgi


    		




 
URL:

















    ReferenceID:21925




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2388
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4034
                           PA5173_tr
                           translation of PA5173
                           310
                           99.67
                           99.99
                           0
                           1572.0
     

     
     
121214
                           gb|AAG08558.1|AE004930_4
                           (AE004930) carbamate kinase [Pseudomonas aeruginosa PAO1]
                           310
                           99.67
                           99.99
                           0
                           1572.0
     

     
     
121215
                           emb|CAA32823.1|
                           (X14693) unnamed protein product [Pseudomonas aeruginosa]
                           310
                           99.67
                           99.99
                           0
                           1572.0
     

     
     
121216
                           gb|AAN66624.1|AE016290_2
                           (AE016777) carbamate kinase [Pseudomonas putida KT2440]
                           310
                           79.67
                           87.74
                           1
                           1270.0
     

     
     
121217
                           gb|AAC22252.1|
                           (U32741) carbamate kinase (arcC) [Haemophilus influenzae Rd] [Haemophilus influenzae Rd KW20]
                           311
                           77.81
                           86.81
                           2
                           1249.0
     

     






      

          
GC ORFID: 45390How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5173Glimmer Score: 

          
Start: 5360649Stop: 5361581

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5173 translation of PA5173Homolog Bit Score 610.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6693 (ORF: BLASTX 503.0), t_PA5173 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTATCGTCGTCGCATTGGGCGGTAATGCCCTGCTACGCCGTGGCGAACCCATGACCGCGGACAACCAG 
CGGGAAAACGTGCGGATCGCCGCCGAACAGATCGCCAAGGTGGCGCCCGGCAACGAGCTGGTGATCGCCCAC 
GGCAACGGCCCCCAGGTCGGCCTGCTGGCCCTCCAGGGGGCCGCCTACGACCAGGTCTCGCCCTACCCGCTG 
GACGTCCTCGGCGCGGAAACCGAGGGCATGATCGGCTACATGATCGAACAGGAGATGGGCAACCTGCTGCCG 
TTCGAAGTGCCGTTCGCCACCATCCTCACCCAGGTCGAGGTGGACGGTAAAGATCCGGCGTTCCAGAACCCG 
ACCAAGCCGATCGGCCCGGTCTACTCCAGGGAAGAAGCCGAGCGCCTGGCCGCCGAGAAGGGCTGGAGCATC 
GCCCCGGACGGCGACAAGTTCCGCCGCGTGGTGCCCAGCCCGCGGCCGAAGCGGATCTTCGAGATCCGCCCG 
GTGAAGTGGCTGCTGGAGAAAGGCACCATCGTCATCTGCGCTGGCGGCGGCGGTATCCCGACCATGTACGAC 
GAGGCCGGGAAGAAGCTCAGCGGCGTCGAGGCGGTGATCGACAAGGACCTCTGCTCCTCGCTGCTGGCCCAG 
GAGCTGGTGGCCGACATCCTGATCATCGCCACCGACGTCGACGCGGCCTACGTCGACTGGGGCAAGCCGACC 
CAGAAGGCCATCGCCCAGGCCCACCCGGACGAACTGGAGCGCCTCGGCTTCGCCGCCGGCTCCATGGGACCG 
AAGGTCCAGGCCGCCATCGAGTTCGCCCGCGCCACCGGCAAGGACGCGGTGATCGGTTCGCTCGCGGACATC 
GTCGCGATCACCGAGGGCAAGGCGGGAACACGGGTCAGCACGCGCAAGGCGGGCATCGAGTACCGCTGA