ViewGene
Locus Name:
GeneID:
Location:

GeneID:2386
TrivialName: PA14_56220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56220
PAO1 Ortholog Locus:PA4328
Sequence Length:915
Protein Length:304
Start: 5019403
Stop: 5020317
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07716.1|AE004849_3 (AE004849) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 303/304 (99%), Positives = 303/304 (99%)
Sequence:
ATGAACCTGCATAACCTGCTGGTGGTCGTCGATCCGAGCAGCGACGAACAGCCGGCCCTTACCCGTGCCCAG
TGGATCGCCGAACGCAGCGGCGCCAGCGTCGAGTTGCTGCTGTGCGACTTCAACCCGGCGCTGGACGGCGGG
CTGTTCTTCGACAGTCACTCGCTGCAGCGTGCCCGCGACCTTTACCTGGACGAACGGGTCACCTGGCTGGAG
CAGCTTTCCATGCCGCTGCAGCAGGCCGGCATCCGCACTCAGGTCGAGGCCCAGTGGGGCAAGCCGCTGGAC
CGTATGGTCCTGCAACGGGTCGGCGAAACCCGGCCCGACCTGGTCCTCAAGAGCACCCGCAAGCACAACCTG
CTGCGCCGCCTGCTACTGGGCAACAGCGACTGGCAATTGATCCGCCACTGCCCGCAGCCGCTCTGGCTGGTC
CATCACGACGCCTGGCGCGGCCAGCGCCTGTGCGCGGCGCTCGACCCACTGCATGCCAGCGACAAGCCGGCC
GCCCTCGATCACCGGCTGATCGCCGCCGCCCGCCAGCTCGAAGCCAGCCTGGGGCTGCGCGCCGACTACCTG
CATACCCACGCGGCGATGCCGCGCAGCCTGCTGTTCGACGCGGAAATGCTCGCCGGCTACGAGCGTTTCGTG
CTGCAACATGAGGAACGTCACCGCCAGGCCTTCGACGACCTGCTGGCGGCCTACCCGGAGATCGCCGCGGAG
CGCCGCCACCTGCTGGCCGGCTATGCCGAGCAGGCGATCCCCGACTTCGTCCGGGCCAACGACATCGACCTG
TTGCTGATGGGCGCGGTCGCCCGGGGGCACCTGGACAACGCGCTGATCGGGCAGACCGCCGAACGCGTCCTG
GAGGAGGTGGAATGCGACCTGCTGGTGCTCAAACCGACAAATGACATCTGA
Translation:
MNLHNLLVVVDPSSDEQPALTRAQWIAERSGASVELLLCDFNPALDGGLFFDSHSLQRARDLYLDERVTWLE
QLSMPLQQAGIRTQVEAQWGKPLDRMVLQRVGETRPDLVLKSTRKHNLLRRLLLGNSDWQLIRHCPQPLWLV
HHDAWRGQRLCAALDPLHASDKPAALDHRLIAAARQLEASLGLRADYLHTHAAMPRSLLFDAEMLAGYERFV
LQHEERHRQAFDDLLAAYPEIAAERRHLLAGYAEQAIPDFVRANDIDLLLMGAVARGHLDNALIGQTAERVL
EEVECDLLVLKPTNDI*
AnnotationID:2394GeneID:2386
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 07:07:51
Gene Name:
Confidence Code:3
GeneProduct:putative universal stress protein
Cell Localization:(1) Cytoplasmic
Synonyms:PA4328
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0589
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0589, UspA, Universal stress protein UspA 
and related nucleotide-binding proteins 
[Signal transduction mechanisms]
CD-Length = 154 residues,  94.8% aligned
Score = 53.1 bits (126), Expect = 4e-08
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 4/128 (3%)







   
Genomic Context:






   
Comment:
possible gene name: uspA


















    ReferenceID:4775




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21921




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36683




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2386_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2386
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4032
                           PA4328_tr
                           translation of PA4328
                           304
                           99.67
                           99.67
                           0
                           1574.0
     

     
     
121212
                           gb|AAG07716.1|AE004849_3
                           (AE004849) hypothetical protein PA4328 [Pseudomonas aeruginosa PAO1]
                           304
                           99.67
                           99.67
                           0
                           1574.0
     

     






      

          
GC ORFID: 45388How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4328Glimmer Score: 

          
Start: 4283079Stop: 4283993

          
Length: 915


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4328 translation of PA4328Homolog Bit Score 610.0

          
Other Homologs:  t_PA4328 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGCATAACCTGCTGGTGGTCGTCGATCCGAGCAGCGACGAACAGCCGGCCCTTACCCGTGCCCAG 
TGGATCGCCGAACGCAGCGGCGCCAGCGTCGAGTTGCTGCTGTGCGACTTCAACCCGGCGCTGGACGGCGGG 
CTGTTCTTCGACAGTCACTCGCTGCAGCGTGCCCGCGACCTTTACCTGGACGAACGGGTCACCTGGCTGGAG 
CAGCTTTCCATGCCGCTGCAGCAGGCCGGCATCCGCACTCAGGTCGAGGCCCAGTGGGGCAAGCCGCTGGAC 
CGTATGGTCCTGCAACGGGTCGGCGAAACCCGGCCCGACCTGGTCCTCAAGAGCACCCGCAAGCACAACCTG 
CTGCGCCGCCTGCTACTGGGCAACAGCGACTGGCAATTGATCCGCCACTGCCCGCAGCCGCTCTGGCTGGTC 
CATCACGACGCCTGGCGCGGCCAGCGCCTGTGCGCGGCGCTCGACCCACTGCATGCCAGCGACAAGCCGGCC 
GCCCTCGATCACCGGCTGATCGCCGCCGCCCGCCAGCTCGAAGCCAGCCTGGGGCTGCGCGCCGACTACCTG 
CATACCCACGCGGCGATGCCGCGCAGCCTGCTGTTCGACGCGGAAATGCTCGCCGGCTACGAGCGTTTCGTG 
CTGCAACATGAGGAACGTCACCGCCAGGCCTTCGACGACCTGCTGGCGGCCTACCCGGAGATCGCCGCGGAG 
CGCCGCCACCTGCTGGCCGGCTATGCCGAGCAGGCGATCCCCGACTTCGTCCGGGCCAACGACATCGACCTG 
TTGCTGATGGGCGCGGTCGCCCGGGGGCACCTGGACAACGCGCTGATCGGGCAGACCGCCGAACGCGTCCTG 
GAGGAGGTGGAATGCGACCTGCTGGTGCTCAAACCGACAAATGACATCTGA