ViewGene
Locus Name:
GeneID:
Location:

GeneID:2384
TrivialName: PA14_19710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19710
PAO1 Ortholog Locus:PA3429
Sequence Length:897
Protein Length:298
Start: 1700492
Stop: 1701388
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06817.1|AE004764_3 (AE004764) probable epoxide hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 296/298 (99%), Positives = 297/298 (99%)
Sequence:
GTGACCGCGGCGCTGCCCGGCATTCCCCTGGAGGCCTGGCGGAGGCGCGGCCGCACTCTGGATTTCAAGGGC
TTCCCGATCCGCTACTGGGAAGCCGGGCAGGGTCGGCCGTTGCTGCTGATCCACGGTTTTCCCAGCGCCGCC
TGGGACTGGCACTACCTCTGGGAGCCGCTGGCGCAGCGCTACCGCGTGCTGGTCTGCGACCTGCTCGGCTTC
GGCGATTCGGCCAAGCCGCGCGCCCATCGCTACAGCCTGCTGGAGCAGGCCGACCTGCAACAGGGGCTGCTC
GGCCGCCTGGGAGTCGACGAGCCGCTGCACGTGCTGGCCCACGACTACGGCGACAGCGTCGCCCAGGAACTG
CTCGCCCGCCATCACGAAGGCCGGCTGCGGCTCGCCTCCTGCGTGTTCCTCAATGGTGGGCTGTTCCCGGAA
ACGCACCGCCCGGTGCTCAGCCAGAAGCTGTTGCTGAGCCCGTTGGGCGGGCTGTTCGGCCGGCTGTTCGAC
CGCCGCGCCCTGGCGCGCAACTTCGCCAAGGTCTTCGGCCCGCGCAGCCAGCCCGGCGAGACCGAGCTGGAT
GCCTTCTGGAGCCTGATCGAAAGCAACCAGGGGCAGCGGGTGATGCATCGCCTGATCCGCTACATCGTCGAC
CGCCGCGAGCAGCGTGAGCGCTGGGTGGCGGCGTTGCAGCACGGCGGGGTGCCGTTGCGGGTGATCGACGGA
GCCGTCGACCCGATCTCCGGGGCGCACATGGTCGAGCGCTACCGGCAACTGGTCGCCGATGCCGACTGCGTG
CTGCTCGATGGCATCGGCCATTATCCGCAGATCGAAGCGCCGGCGGCGGTGCTCGAACATTACCTGGCGTTT
CGCGCCCGACTGGATGATTCAGAGTTTTCTTAA
Translation:
MTAALPGIPLEAWRRRGRTLDFKGFPIRYWEAGQGRPLLLIHGFPSAAWDWHYLWEPLAQRYRVLVCDLLGF
GDSAKPRAHRYSLLEQADLQQGLLGRLGVDEPLHVLAHDYGDSVAQELLARHHEGRLRLASCVFLNGGLFPE
THRPVLSQKLLLSPLGGLFGRLFDRRALARNFAKVFGPRSQPGETELDAFWSLIESNQGQRVMHRLIRYIVD
RREQRERWVAALQHGGVPLRVIDGAVDPISGAHMVERYRQLVADADCVLLDGIGHYPQIEAPAAVLEHYLAF
RARLDDSEFS*
AnnotationID:2392GeneID:2384
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 17:05:49
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase, alpha/beta fold family
Cell Localization:()
Synonyms:PA3429
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative acyltransferases
Functional Category Confidence Code:5
COGs:pfam00561,COG0596
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70197.1|AE016659_3 (AE016791) hydrolase, alpha/beta fold family [Pseudomonas putida
           KT2440]
          Length = 299

 Score =  380 bits (977), Expect = e-105
 Identities = 182/282 (64%), Positives = 217/282 (76%)

>gb|AAN50986.1|AE011534_6 (AE011534) Predicted hydrolases or acyltransferases, alpha/beta
           hydrolase superfamily [Leptospira interrogans serovar
           lai str. 56601]
          Length = 283

 Score =  250 bits (638), Expect = 8e-66
 Identities = 126/283 (44%), Positives = 185/283 (65%), Gaps = 8/283 (2%)






 
Structural Features:
pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.
CD-Length = 224 residues,  98.2% aligned
Score = 72.5 bits (177), Expect = 5e-14

COG0596, MhpC, Predicted hydrolases or acyltransferases 
(alpha/beta hydrolase superfamily)
CD-Length = 282 residues, 100.0% aligned
Score = 74.3 bits (180), Expect = 1e-14
Identities = 84/289 (29%), Positives = 114/289 (39%), Gaps = 19/289 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14573




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21917




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32138




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2384_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2384
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4030
                           PA3429_tr
                           translation of PA3429
                           298
                           99.32
                           99.66
                           0
                           1574.0
     

     
     
121120
                           gb|AAG06817.1|AE004764_3
                           (AE004764) probable epoxide hydrolase [Pseudomonas aeruginosa PAO1]
                           298
                           98.99
                           99.66
                           0
                           1571.0
     

     
     
121121
                           gb|AAN70197.1|AE016659_3
                           (AE016791) hydrolase, alpha/beta fold family [Pseudomonas putida KT2440]
                           307
                           59.60
                           71.66
                           17
                           969.0
     

     
     
121122
                           gb|AAN50986.1|AE011534_6
                           (AE011534) Predicted hydrolases or acyltransferases, alpha/beta hydrolase superfamily [Leptospira interrogans serovar lai str. 56601]
                           304
                           41.77
                           61.51
                           27
                           646.0
     

     
     
121123
                           emb|CAB01468.1|
                           (BX842578) Probable hydrolase [Mycobacterium tuberculosis H37Rv]
                           304
                           36.18
                           50.65
                           22
                           418.0
     

     






      

          
GC ORFID: 45386How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3429Glimmer Score: 

          
Start: 3253440Stop: 3252544

          
Length: 897


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3429 translation of PA3429Homolog Bit Score 610.0

          
Other Homologs:  t_PA3429 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCGCGGCGCTGCCCGGCATTCCCCTGGAGGCCTGGCGGAGGCGCGGCCGCACTCTGGATTTCAAGGGC 
TTCCCGATCCGCTACTGGGAAGCCGGGCAGGGTCGGCCGTTGCTGCTGATCCACGGTTTTCCCAGCGCCGCC 
TGGGACTGGCACTACCTCTGGGAGCCGCTGGCGCAGCGCTACCGCGTGCTGGTCTGCGACCTGCTCGGCTTC 
GGCGATTCGGCCAAGCCGCGCGCCCATCGCTACAGCCTGCTGGAGCAGGCCGACCTGCAACAGGGGCTGCTC 
GGCCGCCTGGGAGTCGACGAGCCGCTGCACGTGCTGGCCCACGACTACGGCGACAGCGTCGCCCAGGAACTG 
CTCGCCCGCCATCACGAAGGCCGGCTGCGGCTCGCCTCCTGCGTGTTCCTCAATGGTGGGCTGTTCCCGGAA 
ACGCACCGCCCGGTGCTCAGCCAGAAGCTGTTGCTGAGCCCGTTGGGCGGGCTGTTCGGCCGGCTGTTCGAC 
CGCCGCGCCCTGGCGCGCAACTTCGCCAAGGTCTTCGGCCCGCGCAGCCAGCCCGGCGAGACCGAGCTGGAT 
GCCTTCTGGAGCCTGATCGAAAGCAACCAGGGGCAGCGGGTGATGCATCGCCTGATCCGCTACATCGTCGAC 
CGCCGCGAGCAGCGTGAGCGCTGGGTGGCGGCGTTGCAGCACGGCGGGGTGCCGTTGCGGGTGATCGACGGA 
GCCGTCGACCCGATCTCCGGGGCGCACATGGTCGAGCGCTACCGGCAACTGGTCGCCGATGCCGACTGCGTG 
CTGCTCGATGGCATCGGCCATTATCCGCAGATCGAAGCGCCGGCGGCGGTGCTCGAACATTACCTGGCGTTT 
CGCGCCCGACTGGATGATTCAGAGTTTTCTTAA