ViewGene
Locus Name:
GeneID:
Location:

GeneID:2383
TrivialName: PA14_22470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22470
PAO1 Ortholog Locus:PA3225
Sequence Length:930
Protein Length:309
Start: 1956553
Stop: 1955624
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06613.1|AE004745_10 (AE004745) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 309/309 (100%), Positives = 309/309 (100%)
Sequence:
ATGAAAGCGCCACGCGTAACCCTGGACCAATGGCGGACCCTGCAGGCGGTGGTCGACCACGGCGGCTTCGCC
CAGGCCGCGGAAGCCCTGCACCGCTCGCAATCGTCGATCAGCTATACCGTGGCGCGCATGCAGGAACAGCTC
GGCGTGCCGCTGCTGCGCATCGACGGACGCAAGGCGGTGCTGACCGAGGCCGGCGAAGTGCTGCTGCGCCGC
TCGCGGCAACTGGTCAAGCAGGCCGGGCAACTGGAGGAACTGGCCCACCACATGGAACAGGGCTGGGAGCCC
GAGGTGCGTCTGGTGGTGGACGCCGCCTACCCCACCGCGCGGATCGTCCGCTCGCTGTCCGCCTTCATGCCG
CAGAGCCGCGGCTGTCGCGTGCTGCTGCGCGAGGAAGTGCTCTCCGGCGTCGAGGAAGCGCTGATCCAGGGC
GCCGCCGACCTGGCGATCAGCGGCCTGATCATTCCCGGCCACCTCGGCGCCGACCTCAGCGTGGTCGAGTTC
GTCGCCGTGGCCCACCCCGACCATCCGCTGCACCGCCTGCAACGCGAGCTGACCCACCAGGACCTGGAAACC
CAGATGCAGGTGGTGATCCGCGACAGCGGCCGGCTACAGCCGCGCGACCACGGCTGGCTCGGCGCCGAACAG
CGCTGGACGGTGGGCAGCCTGGCTACCGCGGCGACCTTCGTCGGCAACGGCCTGGGCTTCGCCTGGCTGCCG
CGACACATCATCGAGCGCGAACTGCAGAGCGGCCAACTCAAGCCGCTGCCGCTGAGCCAGGGCGGCGTGCGG
CAGAGCCGCTTCTACCTCTACACCAACAAGGAGAAGCCGCTCGGCCCGGCCAGCCAGATCCTCATGGAAATG
CTCAAGTCGTTCGCCAACGTACCGCTCAACGCGCCCTTCGCGGCGCCCGAACCGGCCGCCGAGTGA
Translation:
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRR
SRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQG
AADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQ
RWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEM
LKSFANVPLNAPFAAPEPAAE*
AnnotationID:2391GeneID:2383
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 10:10:52
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA3225
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70112.1|AE016651_2 (AE016791) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 307

 Score =  494 bits (1271), Expect = e-139
 Identities = 247/307 (80%), Positives = 273/307 (88%)

>gb|AAN55472.1|AE015685_1 (AE015685) transcriptional regulator, LysR family [Shewanella
           oneidensis MR-1]
          Length = 302

 Score =  236 bits (603), Expect = 1e-61
 Identities = 125/286 (43%), Positives = 178/286 (62%), Gaps = 1/286 (0%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription] 
CD-Length = 297 residues,  97.6% aligned
Score =  118 bits (296), Expect = 8e-28
Identities = 80/293 (27%), Positives = 120/293 (40%), Gaps = 9/293 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4769




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21915




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32316




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2383_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2383
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4029
                           PA3225_tr
                           translation of PA3225
                           309
                           99.99
                           99.99
                           0
                           1574.0
     

     
     
121116
                           gb|AAG06613.1|AE004745_10
                           (AE004745) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           309
                           99.99
                           99.99
                           0
                           1574.0
     

     
     
121117
                           gb|AAN70112.1|AE016651_2
                           (AE016791) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           309
                           79.93
                           88.34
                           2
                           1271.0
     

     
     
121118
                           gb|AAQ59595.1|
                           (AE016916) probable transcriptional regulator, LysR family [Chromobacterium violaceum ATCC 12472]
                           316
                           44.62
                           58.86
                           24
                           673.0
     

     
     
121119
                           gb|AAN55472.1|AE015685_1
                           (AE015685) transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
                           310
                           41.29
                           58.70
                           9
                           599.0
     

     






      

          
GC ORFID: 45385How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3225Glimmer Score: 

          
Start: 2997378Stop: 2998307

          
Length: 930


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3225 translation of PA3225Homolog Bit Score 610.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6052 (ORF: BLASTX 490.0), t_PA3225 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCGCCACGCGTAACCCTGGACCAATGGCGGACCCTGCAGGCGGTGGTCGACCACGGCGGCTTCGCC 
CAGGCCGCGGAAGCCCTGCACCGCTCGCAATCGTCGATCAGCTATACCGTGGCGCGCATGCAGGAACAGCTC 
GGCGTGCCGCTGCTGCGCATCGACGGACGCAAGGCGGTGCTGACCGAGGCCGGCGAAGTGCTGCTGCGCCGC 
TCGCGGCAACTGGTCAAGCAGGCCGGGCAACTGGAGGAACTGGCCCACCACATGGAACAGGGCTGGGAGCCC 
GAGGTGCGTCTGGTGGTGGACGCCGCCTACCCCACCGCGCGGATCGTCCGCTCGCTGTCCGCCTTCATGCCG 
CAGAGCCGCGGCTGTCGCGTGCTGCTGCGCGAGGAAGTGCTCTCCGGCGTCGAGGAAGCGCTGATCCAGGGC 
GCCGCCGACCTGGCGATCAGCGGCCTGATCATTCCCGGCCACCTCGGCGCCGACCTCAGCGTGGTCGAGTTC 
GTCGCCGTGGCCCACCCCGACCATCCGCTGCACCGCCTGCAACGCGAGCTGACCCACCAGGACCTGGAAACC 
CAGATGCAGGTGGTGATCCGCGACAGCGGCCGGCTACAGCCGCGCGACCACGGCTGGCTCGGCGCCGAACAG 
CGCTGGACGGTGGGCAGCCTGGCTACCGCGGCGACCTTCGTCGGCAACGGCCTGGGCTTCGCCTGGCTGCCG 
CGACACATCATCGAGCGCGAACTGCAGAGCGGCCAACTCAAGCCGCTGCCGCTGAGCCAGGGCGGCGTGCGG 
CAGAGCCGCTTCTACCTCTACACCAACAAGGAGAAGCCGCTCGGCCCGGCCAGCCAGATCCTCATGGAAATG 
CTCAAGTCGTTCGCCAACGTACCGCTCAACGCGCCCTTCGCGGCGCCCGAACCGGCCGCCGAGTGA