ViewGene
Locus Name:
GeneID:
Location:

GeneID:2382
TrivialName: PA14_64990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64990
PAO1 Ortholog Locus:PA4921
Sequence Length:924
Protein Length:307
Start: 5792041
Stop: 5792964
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08306.1|AE004905_4 (AE004905) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 302/307 (98%), Positives = 302/307 (98%)
Sequence:
ATGCGCACCCGTCTCCCCGCCCTGCTCCTCGGTGTCCTGCTGGCCGGCCAGGCCTGCGGACACACGTCCCCG
CTGCTCGCGCCGGTACGGCAGATCCACGCCTTCGGCGACAGCTATTCGGACAACGGCGAAAGCCAGCGACTG
ACCCGCGAGATGCTCGTCAAGGGCATCGCCGGCGCCCAGGCATTGCCCGGCGAAGTCTACTGGCAGGGCCGC
TGGAGCAACGGCCCGACCGCCGTCGAGGTGCTCGCCCGCCAGCTCGGCGCACAACTGGCCGACCATGCGGTG
GGCGGCGCCAAGAGCGGAGCGGACAACTACTACGGCTGGATGAGCGCCTACCGCCATACCGGCCTCGCCGGC
CAGGTCGACGCCTACCTCGCCACGCTGGACGGCAAGCCGGCCGACGGCCAGGCGCTGCACTTCATCTTCGTC
TCCGCCAACGATTTCTTCGAGCATGAGGATTTCGCCGGCGAGCAGACCCTGGAACAACTGGCCGGCAGCAGC
GTGGCGAACATCCGCGCCGCGGTGCAGCGTCTCGGAGAGGCCGGCGCACGACGCTTCCTGGTGGTCAGTTCG
ACCGACCTGAGCGTGGTCCCGGCGGTGGTCGTCGGCAACCGGGTCGAGCGTGCGCAGCGCTACCTGCAAGCG
GTCAACGCCAGCCTGCCGATCCAGCTCGCCGCCCTGCGCAAGACCCGCGGCCTGGAGCTGAGCTGGTTCGAC
CATCTCACCTTCAGCCGCCACTTGCGGCGCAACTCGGCGCGCTACGGCCTGGTGGAGCTGGACGCGCCCTGC
CAGCCGACCCAGCCCAGCGTCCGCCCGGCCTGCGCCAACCCGGACCAGTACTACTTCTGGGACGAGTGGCAT
CCGACCCGGCGCGTGCACCAACTGGCCGGCGAAGCGATGGCGGCGCGCTACGCGCGCTGA
Translation:
MRTRLPALLLGVLLAGQACGHTSPLLAPVRQIHAFGDSYSDNGESQRLTREMLVKGIAGAQALPGEVYWQGR
WSNGPTAVEVLARQLGAQLADHAVGGAKSGADNYYGWMSAYRHTGLAGQVDAYLATLDGKPADGQALHFIFV
SANDFFEHEDFAGEQTLEQLAGSSVANIRAAVQRLGEAGARRFLVVSSTDLSVVPAVVVGNRVERAQRYLQA
VNASLPIQLAALRKTRGLELSWFDHLTFSRHLRRNSARYGLVELDAPCQPTQPSVRPACANPDQYYFWDEWH
PTRRVHQLAGEAMAARYAR*
AnnotationID:2390GeneID:2382
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 11:11:28
Gene Name:
Confidence Code:3
GeneProduct:putative phospholipase
Cell Localization:()
Synonyms:PA4921
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3240
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3240, COG3240, Phospholipase/lecithinase/hemolysin [Lipid metabolism]
CD-Length = 370 residues,  90.5% aligned
Score =  239 bits (612), Expect = 2e-64
Identities = 114/346 (32%), Positives = 143/346 (41%), Gaps = 50/346 (14%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4767




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21913




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35135




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2382_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2382
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4028
                           PA4921_tr
                           translation of PA4921
                           307
                           98.37
                           98.37
                           0
                           1576.0
     

     
     
121114
                           gb|AAG08306.1|AE004905_4
                           (AE004905) hypothetical protein PA4921 [Pseudomonas aeruginosa PAO1]
                           307
                           98.37
                           98.37
                           0
                           1576.0
     

     
     
121115
                           gb|AAA25731.1|
                           (M30389) ORF2 [Pseudomonas aeruginosa]
                           313
                           28.43
                           28.43
                           219
                           478.0
     

     






      

          
GC ORFID: 45384How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4921Glimmer Score: 

          
Start: 5055722Stop: 5056645

          
Length: 924


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4921 translation of PA4921Homolog Bit Score 611.0

          
Other Homologs:  t_PA4921 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCACCCGTCTCCCCGCCCTGCTCCTCGGTGTCCTGCTGGCCGGCCAGGCCTGCGGACACACGTCCCCG 
CTGCTCGCGCCGGTACGGCAGATCCACGCCTTCGGCGACAGCTATTCGGACAACGGCGAAAGCCAGCGACTG 
ACCCGCGAGATGCTCGTCAAGGGCATCGCCGGCGCCCAGGCATTGCCCGGCGAAGTCTACTGGCAGGGCCGC 
TGGAGCAACGGCCCGACCGCCGTCGAGGTGCTCGCCCGCCAGCTCGGCGCACAACTGGCCGACCATGCGGTG 
GGCGGCGCCAAGAGCGGAGCGGACAACTACTACGGCTGGATGAGCGCCTACCGCCATACCGGCCTCGCCGGC 
CAGGTCGACGCCTACCTCGCCACGCTGGACGGCAAGCCGGCCGACGGCCAGGCGCTGCACTTCATCTTCGTC 
TCCGCCAACGATTTCTTCGAGCATGAGGATTTCGCCGGCGAGCAGACCCTGGAACAACTGGCCGGCAGCAGC 
GTGGCGAACATCCGCGCCGCGGTGCAGCGTCTCGGAGAGGCCGGCGCACGACGCTTCCTGGTGGTCAGTTCG 
ACCGACCTGAGCGTGGTCCCGGCGGTGGTCGTCGGCAACCGGGTCGAGCGTGCGCAGCGCTACCTGCAAGCG 
GTCAACGCCAGCCTGCCGATCCAGCTCGCCGCCCTGCGCAAGACCCGCGGCCTGGAGCTGAGCTGGTTCGAC 
CATCTCACCTTCAGCCGCCACTTGCGGCGCAACTCGGCGCGCTACGGCCTGGTGGAGCTGGACGCGCCCTGC 
CAGCCGACCCAGCCCAGCGTCCGCCCGGCCTGCGCCAACCCGGACCAGTACTACTTCTGGGACGAGTGGCAT 
CCGACCCGGCGCGTGCACCAACTGGCCGGCGAAGCGATGGCGGCGCGCTACGCGCGCTGA