ViewGene
Locus Name:
GeneID:
Location:

GeneID:2381
TrivialName: PA14_12150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12150
PAO1 Ortholog Locus:PA3994
Sequence Length:891
Protein Length:296
Start: 1050399
Stop: 1051289
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07381.1|AE004817_5 (AE004817) probable epoxide hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 292/296 (98%), Positives = 294/296 (99%)
Sequence:
ATGAGCCGCTATGCCTTCGTTTCCACCGATGTCCTGGATATCGCCTACCTGGAGTGGAATCCGCAGGGGGCG
CGCAGCGCCGTCTTGTTGCACGGTTGGCCGGACAGCCCGCATACCTGGAAAGACCTGGCGGAGTCCCTGGCG
GACGCCGGCTATCGGGTGCTGGCACCAGCCCTCCGGGGATTCGCCCCGACCCGCTTCCGCGATGCGTCTACT
CCGCGCAGCGGGCAACTGGCGGCTCTGGCTTGCGATGTGCTGGCATTCGTCGACAGCCTGGCATTGCAACGT
CCCCTGCTGGTCGGCCATGACTGGGGGGCTCGCGCGGTGGCCAGTGCCTGCGGACTGCGCGAGGGCGGCGCC
TCGCACCTGGTGATGCTCTCGGTGGGGTACGCCAGCAACGATCCGCAGCAAGTTCTTTCCCTGCCGCAGGCC
CGTAGCTTCTGGTACCAGTGGTTCATGGCTACGCCACGCGGAGAGCGCGCGCTGCGCGAGGAGGGCGAGGCG
TTCGCCCGGCAGATGTGGGACACCTGGTCGCCGCCGGGATGGTATGCCGAGCGCGATTTCCAGGAGGCCGCC
CAGGCCTTCTCCGGGCCGGACTGGGTTGCCGTGGTGCTGCACTATTACCGGCATCGCTGGGGCTTCGTCGCG
GGGGAGCCGCGCTACGGGGCGGCGGAACAGCGCTTGCTCCCGGCACCGCGCCTGGCGCTGCCGACCCTGGTG
CTGCACGGCGGCGCGGATGCCTGTACCCACCCCGACGGCTCCCGCGGACGCGAGCACTACTTCAGCGGGCGT
TACCAGCGGCTGGTGCTGGAGGGCGTCGGCCATTTTCCGCAGCGTGAGGCGGCCAATCAGGTGGCGGACGCG
ATCCTGCGGTTCTGCGCGGATGACTAG
Translation:
MSRYAFVSTDVLDIAYLEWNPQGARSAVLLHGWPDSPHTWKDLAESLADAGYRVLAPALRGFAPTRFRDAST
PRSGQLAALACDVLAFVDSLALQRPLLVGHDWGARAVASACGLREGGASHLVMLSVGYASNDPQQVLSLPQA
RSFWYQWFMATPRGERALREEGEAFARQMWDTWSPPGWYAERDFQEAAQAFSGPDWVAVVLHYYRHRWGFVA
GEPRYGAAEQRLLPAPRLALPTLVLHGGADACTHPDGSRGREHYFSGRYQRLVLEGVGHFPQREAANQVADA
ILRFCADD*
AnnotationID:2389GeneID:2381
AnnotatorUID: danlee
Modification Date/Time: 2006-02-10 16:04:51
Gene Name:
Confidence Code:3
GeneProduct:probable epoxide hydrolase
Cell Localization:()
Synonyms:PA3994
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG4178,COG0596
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|21955 KOG4178, KOG4178, Soluble epoxide hydrolase [Lipid transport and metabolism]
Length = 322
Score = 86.9 bits (215), Expect = 5e-18
Identities = 82/316 (25%), Positives = 125/316 (39%), Gaps = 38/316 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4765




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21911




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2381
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4027
                           PA3994_tr
                           translation of PA3994
                           296
                           98.64
                           99.32
                           0
                           1575.0
     

     
     
121113
                           gb|AAG07381.1|AE004817_5
                           (AE004817) probable epoxide hydrolase [Pseudomonas aeruginosa PAO1]
                           296
                           98.64
                           99.32
                           0
                           1575.0
     

     






      

          
GC ORFID: 45383How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3994Glimmer Score: 

          
Start: 3903539Stop: 3902649

          
Length: 891


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3994 translation of PA3994Homolog Bit Score 611.0

          
Other Homologs:  t_PA3994 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGCTATGCCTTCGTTTCCACCGATGTCCTGGATATCGCCTACCTGGAGTGGAATCCGCAGGGGGCG 
CGCAGCGCCGTCTTGTTGCACGGTTGGCCGGACAGCCCGCATACCTGGAAAGACCTGGCGGAGTCCCTGGCG 
GACGCCGGCTATCGGGTGCTGGCACCAGCCCTCCGGGGATTCGCCCCGACCCGCTTCCGCGATGCGTCTACT 
CCGCGCAGCGGGCAACTGGCGGCTCTGGCTTGCGATGTGCTGGCATTCGTCGACAGCCTGGCATTGCAACGT 
CCCCTGCTGGTCGGCCATGACTGGGGGGCTCGCGCGGTGGCCAGTGCCTGCGGACTGCGCGAGGGCGGCGCC 
TCGCACCTGGTGATGCTCTCGGTGGGGTACGCCAGCAACGATCCGCAGCAAGTTCTTTCCCTGCCGCAGGCC 
CGTAGCTTCTGGTACCAGTGGTTCATGGCTACGCCACGCGGAGAGCGCGCGCTGCGCGAGGAGGGCGAGGCG 
TTCGCCCGGCAGATGTGGGACACCTGGTCGCCGCCGGGATGGTATGCCGAGCGCGATTTCCAGGAGGCCGCC 
CAGGCCTTCTCCGGGCCGGACTGGGTTGCCGTGGTGCTGCACTATTACCGGCATCGCTGGGGCTTCGTCGCG 
GGGGAGCCGCGCTACGGGGCGGCGGAACAGCGCTTGCTCCCGGCACCGCGCCTGGCGCTGCCGACCCTGGTG 
CTGCACGGCGGCGCGGATGCCTGTACCCACCCCGACGGCTCCCGCGGACGCGAGCACTACTTCAGCGGGCGT 
TACCAGCGGCTGGTGCTGGAGGGCGTCGGCCATTTTCCGCAGCGTGAGGCGGCCAATCAGGTGGCGGACGCG 
ATCCTGCGGTTCTGCGCGGATGACTAG