ViewGene

Locus Name:
GeneID:
Location:

GeneID:2380
TrivialName: PA14_29680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29680
PAO1 Ortholog Locus:PA2661
Sequence Length:894
Protein Length:297
Start: 2571949
Stop: 2571056
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06049.1|AE004695_2 (AE004695) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 295/297 (99%), Positives = 295/297 (99%)
Sequence:
ATGAAACTGGCCGTAGCGCTGATCCACGGCATCGGCGACCAGCCCGATAGCCGCGACGAGGACGGTCTGCAC
AGCTACGCCCGCGAACTGGTGGCGGCGCTGCGCCGACGTCTCGGCGCGGAAGCCGGCGAGGTGGCCTTCCAG
AGCCTGTACTGGGCCAGCGTGCTGGACGCCCGCGAGCTGGACTACCTCAAGCGCATCGAGCGCGAGCCGCTG
GGCTGGCGCTGGCTGCGCCGGGCGGTGACGCTGTTCCTCGGCGACGCCAGCGGCTACCGCAAGGTCAGCGCC
GCCTACGACACCACCTACCAGCAGGTCCACCAGCACGTGCGCAGCGGGATCATGGCCCTGCGCGCGAAGGTC
GGGCCGCAGACGCCGCTGGTGATCCTCGCCCACTCCCTGGGCGGGCACATCGTATCCAACTTCATCTGGGAC
CAGCAGAAACTCAACCGCACGCCGAGTTGCTCGATCGACCCCTTCCTCGGCCTGGAAACCCTGGCCGGGCTG
GTCACCTTCGGTTGCAACATCCCGCTGTTCACCTTCGCCTACGAGAAGGTCTGTCCGATCCGCTTTCCCGGC
CACTGCCTGACCCCGGCGATCCGCCAGCAGGCACGCTGGCTGAACGTCTACGCGCCGGCCGATCCGCTCGGC
TATCCGCTGCGGCCGTTGCAGAACTACGCCGCGGTCGTCCACGAGGACCTCGCCCTGCCGGTCGGTCCCTGG
TACAAGCGGCACACCCCGTTGAGCCACATGGAGTACTGGAACGATGCGCGCTTTCACGATTACCTGGCGGAC
TACCTGCGCCGCCTGTTGGCTGCTGGCCTCGAGCCTGCCGGCGCTGGCCGCGCCCTCCCCGCAGGCGAGCCA
GGAGATCGGCCGCTTGCTGAGCTTTGTTGA
Translation:
MKLAVALIHGIGDQPDSRDEDGLHSYARELVAALRRRLGAEAGEVAFQSLYWASVLDARELDYLKRIEREPL
GWRWLRRAVTLFLGDASGYRKVSAAYDTTYQQVHQHVRSGIMALRAKVGPQTPLVILAHSLGGHIVSNFIWD
QQKLNRTPSCSIDPFLGLETLAGLVTFGCNIPLFTFAYEKVCPIRFPGHCLTPAIRQQARWLNVYAPADPLG
YPLRPLQNYAAVVHEDLALPVGPWYKRHTPLSHMEYWNDARFHDYLADYLRRLLAAGLEPAGAGRALPAGEP
GDRPLAELC*
AnnotationID:2388GeneID:2380
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 17:05:45
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2661
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:4763
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21909
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2380

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4026 PA2661_tr translation of PA2661 297 99.32 99.32 0 1575.0
121112 gb|AAG06049.1|AE004695_2 (AE004695) hypothetical protein PA2661 [Pseudomonas aeruginosa PAO1] 297 99.32 99.32 0 1575.0
GC ORFID: 45382How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2661Glimmer Score:
Start: 2381977Stop: 2382870
Length: 894
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2661 translation of PA2661Homolog Bit Score 611.0
Other Homologs: t_PA2661 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACTGGCCGTAGCGCTGATCCACGGCATCGGCGACCAGCCCGATAGCCGCGACGAGGACGGTCTGCAC
AGCTACGCCCGCGAACTGGTGGCGGCGCTGCGCCGACGTCTCGGCGCGGAAGCCGGCGAGGTGGCCTTCCAG
AGCCTGTACTGGGCCAGCGTGCTGGACGCCCGCGAGCTGGACTACCTCAAGCGCATCGAGCGCGAGCCGCTG
GGCTGGCGCTGGCTGCGCCGGGCGGTGACGCTGTTCCTCGGCGACGCCAGCGGCTACCGCAAGGTCAGCGCC
GCCTACGACACCACCTACCAGCAGGTCCACCAGCACGTGCGCAGCGGGATCATGGCCCTGCGCGCGAAGGTC
GGGCCGCAGACGCCGCTGGTGATCCTCGCCCACTCCCTGGGCGGGCACATCGTATCCAACTTCATCTGGGAC
CAGCAGAAACTCAACCGCACGCCGAGTTGCTCGATCGACCCCTTCCTCGGCCTGGAAACCCTGGCCGGGCTG
GTCACCTTCGGTTGCAACATCCCGCTGTTCACCTTCGCCTACGAGAAGGTCTGTCCGATCCGCTTTCCCGGC
CACTGCCTGACCCCGGCGATCCGCCAGCAGGCACGCTGGCTGAACGTCTACGCGCCGGCCGATCCGCTCGGC
TATCCGCTGCGGCCGTTGCAGAACTACGCCGCGGTCGTCCACGAGGACCTCGCCCTGCCGGTCGGTCCCTGG
TACAAGCGGCACACCCCGTTGAGCCACATGGAGTACTGGAACGATGCGCGCTTTCACGATTACCTGGCGGAC
TACCTGCGCCGCCTGTTGGCTGCTGGCCTCGAGCCTGCCGGCGCTGGCCGCGCCCTCCCCGCAGGCGAGCCA
GGAGATCGGCCGCTTGCTGAGCTTTGTTGA