ViewGene

Locus Name:
GeneID:
Location:

GeneID:238
TrivialName: PA14_01160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01160
PAO1 Ortholog Locus:PA0095
Sequence Length:2226
Protein Length:741
Start: 113281
Stop: 115506
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03485.1|AE004448_4 (AE004448) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 733/741 (98%), Positives = 740/741 (99%)
Sequence:
ATGGCACTTGCGCAACAGACCCGCCTGGTCCGGGTCGACAGTCCGCTCGGCGCGGAGGTCCTGCAATTGCAG
CGAATGGAGGGTCGCGAAGAGCTCGGCCGGCCGTTCGCCTACGAGCTGGAACTGATCTCGGAAAACCCCGAC
CTGCCACTCGACGGGCTGCTGGGCAAGCCGGCCAGCCTGGCGCTGGAACTGCACGACGGCAGCCGGCGGCAT
TTCCACGGCATCGTCGCCGCTTGCAGCCAGGGATCCGGCAACGGCCAGTTCGCCAGCTACCAGGTCACCCTG
CGCCCCTGGCTGTGGCTGCTGACGCGCACCTCCGACTGCCGCATCTTCCAGAACCAGAAGGTCCCGGACATC
ATCAAGCAGGTGTTCCGCGACCTCGGCTTCTCCGACTTCGAGGACGCCCTGAGCCGCTCCTACCGCGAGTGG
GAATACTGCGTGCAGTACCGCGAGACCAGTTTCGACTTCGTCAGCCGGCTGATGGAGCAGGAAGGCATCTAC
TACTGGTTCCGCCACGAGCGGAATCGGCACATCCTGGTTCTATCCGACGCCTATGGCGCGCACCAGAGCCCG
CCGAACTACGCCAGCGTGCCCTACTACCCGCCGACCCTGGAACAGCGCGAGCGCGACCATTTCTACGACTGG
CACATGGCGCGCGAGGTGCAGTCCGGCTCACTGAGCCTCAACGACTACGACTTCCAGCGTCCCGGCGCGCGC
CTGGAGGTGCGTTCGAACATCGCCCGCTCGCACGCGGCGGCCGACTACCCGCTGTACGACTACCCTGGCGAA
TACGTACAGAGCCAGGACGGCGAGCAGTACGCGCGGACCCGTATCGAAGCCTTGCAGGCGCGCTACGAACGG
GTGCGCCTGCGCGGCCGCGCCCGCGGCCTGGGTTCCGGCCACCTGTTCAAGCTCAGCGGCTACCCGCGCGAG
GACCAGAACCGCGAGTACCTGGTGGTCGGCGCCGATTACCGGGTGGTCCAGGAACTCTACGAGACCGGCGGC
GGCGGGGTGGGCGCGCAGTTCGAAAGCGAGCTGGACTGCATCGATGCCGGCCAGGCCTACCGCCCCTTGCCG
ACCACTCCGCTGCCGATCGTCCGTGGCCCGCAGACTGCGGTGGTGGTCGGGCCCAAGGGCGAGGAGATCTGG
ACCGACCAGTACGGCCGGGTCAAGGTGCATTTCCACTGGGACCGCCACGACCAGTCCAACGAGAACAGCTCC
TGCTGGATACGCGTCTCCCAGGCCTGGGCGGGGAAGAACTGGGGCTCGGTGCAGATCCCGCGGATCGGCCAG
GAAGTGATCGTCAGCTTCCTCGAAGGCGACCCGGACCGTCCGATCATCACCGGGCGGGTCTACAACGCCGAG
CAGACGGTGCCCTACGAGCTGCCGGCGAACGCCACCCAGAGCGGCACCAAGAGCCGTTCGAGCAAGGGCGGC
ACGCCGGCCAACTTCAACGAGATCCGCATGGAGGACAAGAAGGGCGCCGAGCAGTTGTTCATCCATGCCGAG
AAGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGGTCGGCCACGACCGGACCAAGACCATCGAC
TACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATAACCATCGGC
GTCGACCGCACCGAGAAGGTCGGTAACAACGAGAAGATCAGTATCGGCGCGAACCGCACCGAGGACGTCGGC
AGCAACGAGACCATCAGCATCGGCGTCGACCGCACCGAGAAGGTCGGCAGCAACGAGAAGATCAGCATCGGT
GCCAATCGCACCGAGGACGTCGGCAACGACGAGACCATCAGCATCGGCGCGAACCGTAGCGAGTCGGTGGGC
AACAACGAGACGATCAGCATCGGCGCCGACCGCAGCGAGTCGGTGGGCGCCAACGAGACCATCGACATAGGC
GGCAACCAGAGCACCAGCATCGGCAAGAACGAGTCGCGCAGCGTCGGCCAGGGCCGCGATACCTCGGTGGGC
AAGGACGATAGCCTGGACGTGGGCAAGAGCTTCACGCTCAATGCCGGCGACTCGATCACCCTGGTCACCGGT
GCCGCCAGCATCCGCATGAAGAAGGACGGCAGCATCGTCATCAGCGGCAAGAACATCACCATCGACGGATCC
GGGGCGATCAACATCAAGGCCGACAAGAACGTGGTGGTGAAGGGACGCAAGATCCTCCAGAACTGA
Translation:
MALAQQTRLVRVDSPLGAEVLQLQRMEGREELGRPFAYELELISENPDLPLDGLLGKPASLALELHDGSRRH
FHGIVAACSQGSGNGQFASYQVTLRPWLWLLTRTSDCRIFQNQKVPDIIKQVFRDLGFSDFEDALSRSYREW
EYCVQYRETSFDFVSRLMEQEGIYYWFRHERNRHILVLSDAYGAHQSPPNYASVPYYPPTLEQRERDHFYDW
HMAREVQSGSLSLNDYDFQRPGARLEVRSNIARSHAAADYPLYDYPGEYVQSQDGEQYARTRIEALQARYER
VRLRGRARGLGSGHLFKLSGYPREDQNREYLVVGADYRVVQELYETGGGGVGAQFESELDCIDAGQAYRPLP
TTPLPIVRGPQTAVVVGPKGEEIWTDQYGRVKVHFHWDRHDQSNENSSCWIRVSQAWAGKNWGSVQIPRIGQ
EVIVSFLEGDPDRPIITGRVYNAEQTVPYELPANATQSGTKSRSSKGGTPANFNEIRMEDKKGAEQLFIHAE
KNQDIEVENDESHWVGHDRTKTIDYDETVHVKHDRTETVDNNETITIGVDRTEKVGNNEKISIGANRTEDVG
SNETISIGVDRTEKVGSNEKISIGANRTEDVGNDETISIGANRSESVGNNETISIGADRSESVGANETIDIG
GNQSTSIGKNESRSVGQGRDTSVGKDDSLDVGKSFTLNAGDSITLVTGAASIRMKKDGSIVISGKNITIDGS
GAINIKADKNVVVKGRKILQN*
AnnotationID:248GeneID:238
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0095
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAK31601.1| (AY027922) VgrG-like protein [Pseudomonas synxantha]
          Length = 379

 Score =  455 bits (1171), Expect = e-127
 Identities = 227/351 (64%), Positives = 270/351 (76%), Gaps = 2/351 (0%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:479
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17621
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33440
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:238_cdd.html
URL:
Homologs By Global Alignment
Gene ID:238

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
403 PA0095_tr translation of PA0095 741 98.92 99.86 0 3851.0
22905 gb|AAG03485.1|AE004448_4 (AE004448) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 741 98.92 99.86 0 3851.0
404 PA2685_tr translation of PA2685 790 68.48 75.06 113 2804.0
22906 gb|AAG06073.1|AE004696_7 (AE004696) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 790 68.48 75.06 113 2804.0
22907 gb|AAG03481.1|AE004447_14 (AE004447) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 743 65.67 73.21 102 2475.0
GC ORFID: 43240How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0095Glimmer Score:
Start: 5914620Stop: 5916845
Length: 2226
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0095 translation of PA0095Homolog Bit Score 1488.0
Other Homologs: t_PA0095 (ORF: GLIMMER)
GC ORF Sequence
ATGGCACTTGCGCAACAGACCCGCCTGGTCCGGGTCGACAGTCCGCTCGGCGCGGAGGTCCTGCAATTGCAG
CGAATGGAGGGTCGCGAAGAGCTCGGCCGGCCGTTCGCCTACGAGCTGGAACTGATCTCGGAAAACCCCGAC
CTGCCACTCGACGGGCTGCTGGGCAAGCCGGCCAGCCTGGCGCTGGAACTGCACGACGGCAGCCGGCGGCAT
TTCCACGGCATCGTCGCCGCTTGCAGCCAGGGATCCGGCAACGGCCAGTTCGCCAGCTACCAGGTCACCCTG
CGCCCCTGGCTGTGGCTGCTGACGCGCACCTCCGACTGCCGCATCTTCCAGAACCAGAAGGTCCCGGACATC
ATCAAGCAGGTGTTCCGCGACCTCGGCTTCTCCGACTTCGAGGACGCCCTGAGCCGCTCCTACCGCGAGTGG
GAATACTGCGTGCAGTACCGCGAGACCAGTTTCGACTTCGTCAGCCGGCTGATGGAGCAGGAAGGCATCTAC
TACTGGTTCCGCCACGAGCGGAATCGGCACATCCTGGTTCTATCCGACGCCTATGGCGCGCACCAGAGCCCG
CCGAACTACGCCAGCGTGCCCTACTACCCGCCGACCCTGGAACAGCGCGAGCGCGACCATTTCTACGACTGG
CACATGGCGCGCGAGGTGCAGTCCGGCTCACTGAGCCTCAACGACTACGACTTCCAGCGTCCCGGCGCGCGC
CTGGAGGTGCGTTCGAACATCGCCCGCTCGCACGCGGCGGCCGACTACCCGCTGTACGACTACCCTGGCGAA
TACGTACAGAGCCAGGACGGCGAGCAGTACGCGCGGACCCGTATCGAAGCCTTGCAGGCGCGCTACGAACGG
GTGCGCCTGCGCGGCCGCGCCCGCGGCCTGGGTTCCGGCCACCTGTTCAAGCTCAGCGGCTACCCGCGCGAG
GACCAGAACCGCGAGTACCTGGTGGTCGGCGCCGATTACCGGGTGGTCCAGGAACTCTACGAGACCGGCGGC
GGCGGGGTGGGCGCGCAGTTCGAAAGCGAGCTGGACTGCATCGATGCCGGCCAGGCCTACCGCCCCTTGCCG
ACCACTCCGCTGCCGATCGTCCGTGGCCCGCAGACTGCGGTGGTGGTCGGGCCCAAGGGCGAGGAGATCTGG
ACCGACCAGTACGGCCGGGTCAAGGTGCATTTCCACTGGGACCGCCACGACCAGTCCAACGAGAACAGCTCC
TGCTGGATACGCGTCTCCCAGGCCTGGGCGGGGAAGAACTGGGGCTCGGTGCAGATCCCGCGGATCGGCCAG
GAAGTGATCGTCAGCTTCCTCGAAGGCGACCCGGACCGTCCGATCATCACCGGGCGGGTCTACAACGCCGAG
CAGACGGTGCCCTACGAGCTGCCGGCGAACGCCACCCAGAGCGGCACCAAGAGCCGTTCGAGCAAGGGCGGC
ACGCCGGCCAACTTCAACGAGATCCGCATGGAGGACAAGAAGGGCGCCGAGCAGTTGTTCATCCATGCCGAG
AAGAACCAGGACATCGAGGTCGAGAACGACGAGAGCCACTGGGTCGGCCACGACCGGACCAAGACCATCGAC
TACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATAACCATCGGC
GTCGACCGCACCGAGAAGGTCGGTAACAACGAGAAGATCAGTATCGGCGCGAACCGCACCGAGGACGTCGGC
AGCAACGAGACCATCAGCATCGGCGTCGACCGCACCGAGAAGGTCGGCAGCAACGAGAAGATCAGCATCGGT
GCCAATCGCACCGAGGACGTCGGCAACGACGAGACCATCAGCATCGGCGCGAACCGTAGCGAGTCGGTGGGC
AACAACGAGACGATCAGCATCGGCGCCGACCGCAGCGAGTCGGTGGGCGCCAACGAGACCATCGACATAGGC
GGCAACCAGAGCACCAGCATCGGCAAGAACGAGTCGCGCAGCGTCGGCCAGGGCCGCGATACCTCGGTGGGC
AAGGACGATAGCCTGGACGTGGGCAAGAGCTTCACGCTCAATGCCGGCGACTCGATCACCCTGGTCACCGGT
GCCGCCAGCATCCGCATGAAGAAGGACGGCAGCATCGTCATCAGCGGCAAGAACATCACCATCGACGGATCC
GGGGCGATCAACATCAAGGCCGACAAGAACGTGGTGGTGAAGGGACGCAAGATCCTCCAGAACTGA