ViewGene
Locus Name:
GeneID:
Location:

GeneID:2379
TrivialName: PA14_03160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03160
PAO1 Ortholog Locus:PA0256
Sequence Length:933
Protein Length:310
Start: 277935
Stop: 277003
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03645.1|AE004463_10 (AE004463) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 310/310 (100%), Positives = 310/310 (100%)
Sequence:
ATGCGCTCATGGCATGGCGTAGTCACGAAAATCGCCAAGCAAGGCAAGGGCGCCGTGGTCAAGAATCGACTC
GGCCCGGAAGAGCTTCTGGTGCCCTTCACAGTGAGTACGCTCGTCGAGGTCGACCTGGACGCAAGGATCTAC
GGAACGGATGTGGACGACACGCCCTGGGCGGAGGGCGACGAACGAAAGGAGGTGCTGGTCGGTACCGAAGTG
GAACTGCTGACCGATACGGATACCTTTCCTACCCATGCGTCCCAGGTGCTCAGCGCCAATTTCCGTTTCGCC
CTCGACATCGTCAAGGGAGGGCTCAGCGGCCCGGTCAGGAAAGGGGCGGTCCTGGTCATCTACCACGACTTC
CAGCAGGAGATCCGGAGAGGCGACTCCGGCAGCGCCTTCGCGGAGGCGGTCGTCGCCTATGCGCGGAACAAG
CTCTACAAGCCGGCCTTCGCGATCAAGGCCGATACCAACTACGCCCAGTTGGTTCGGGATCTAGGCAAGGTT
GCCGCGGAGAGCGGCGAACAGTACTTCATCGATACGATCCTCATCGCCACCCACGGCACGGCTGGCCAACTC
TGGCTGGGCAACCCCCACGGCGATAGCACCGCGGACGTCATGGCCCGGCGTGTCCAGGGCAAGCAGTTCGTC
GAGCCCCAGGCCTTTGGTGCGACCCTTCTCGAACTGTTCGGCAAGGAACTGGCCATCGCCCTCTACGGGTGC
GACTTCGCCGGGGACGAGGACGGAGAAGCGGCGGCCCTCGAGCTGCGCATCGCCGCCAACGCGAGAGCGGTC
TACGCCGGCAAGGGCACGGTGTATCTCAATGCCAGCAAAGAGGGTCGTTCCACGGTGACCTGCAGCAAGGCG
ATGGTGGTCTACCGGACCGACAAGATCGAGGTACTGGGTGGAAACCAGGTACCGGTATTCGATATCTGA
Translation:
MRSWHGVVTKIAKQGKGAVVKNRLGPEELLVPFTVSTLVEVDLDARIYGTDVDDTPWAEGDERKEVLVGTEV
ELLTDTDTFPTHASQVLSANFRFALDIVKGGLSGPVRKGAVLVIYHDFQQEIRRGDSGSAFAEAVVAYARNK
LYKPAFAIKADTNYAQLVRDLGKVAAESGEQYFIDTILIATHGTAGQLWLGNPHGDSTADVMARRVQGKQFV
EPQAFGATLLELFGKELAIALYGCDFAGDEDGEAAALELRIAANARAVYAGKGTVYLNASKEGRSTVTCSKA
MVVYRTDKIEVLGGNQVPVFDI*
AnnotationID:2387GeneID:2379
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:08
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0256
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:4761




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21907




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2379
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4025
                           PA0256_tr
                           translation of PA0256
                           310
                           99.99
                           99.99
                           0
                           1579.0
     

     
     
121111
                           gb|AAG03645.1|AE004463_10
                           (AE004463) hypothetical protein PA0256 [Pseudomonas aeruginosa PAO1]
                           310
                           99.99
                           99.99
                           0
                           1579.0
     

     






      

          
GC ORFID: 45381How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0256Glimmer Score: 

          
Start: 6079276Stop: 6078344

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0256 translation of PA0256Homolog Bit Score 612.0

          
Other Homologs:  t_PA0256 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCTCATGGCATGGCGTAGTCACGAAAATCGCCAAGCAAGGCAAGGGCGCCGTGGTCAAGAATCGACTC 
GGCCCGGAAGAGCTTCTGGTGCCCTTCACAGTGAGTACGCTCGTCGAGGTCGACCTGGACGCAAGGATCTAC 
GGAACGGATGTGGACGACACGCCCTGGGCGGAGGGCGACGAACGAAAGGAGGTGCTGGTCGGTACCGAAGTG 
GAACTGCTGACCGATACGGATACCTTTCCTACCCATGCGTCCCAGGTGCTCAGCGCCAATTTCCGTTTCGCC 
CTCGACATCGTCAAGGGAGGGCTCAGCGGCCCGGTCAGGAAAGGGGCGGTCCTGGTCATCTACCACGACTTC 
CAGCAGGAGATCCGGAGAGGCGACTCCGGCAGCGCCTTCGCGGAGGCGGTCGTCGCCTATGCGCGGAACAAG 
CTCTACAAGCCGGCCTTCGCGATCAAGGCCGATACCAACTACGCCCAGTTGGTTCGGGATCTAGGCAAGGTT 
GCCGCGGAGAGCGGCGAACAGTACTTCATCGATACGATCCTCATCGCCACCCACGGCACGGCTGGCCAACTC 
TGGCTGGGCAACCCCCACGGCGATAGCACCGCGGACGTCATGGCCCGGCGTGTCCAGGGCAAGCAGTTCGTC 
GAGCCCCAGGCCTTTGGTGCGACCCTTCTCGAACTGTTCGGCAAGGAACTGGCCATCGCCCTCTACGGGTGC 
GACTTCGCCGGGGACGAGGACGGAGAAGCGGCGGCCCTCGAGCTGCGCATCGCCGCCAACGCGAGAGCGGTC 
TACGCCGGCAAGGGCACGGTGTATCTCAATGCCAGCAAAGAGGGTCGTTCCACGGTGACCTGCAGCAAGGCG 
ATGGTGGTCTACCGGACCGACAAGATCGAGGTACTGGGTGGAAACCAGGTACCGGTATTCGATATCTGA