ViewGene
Locus Name:
GeneID:
Location:

GeneID:2378
TrivialName: PA14_72550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72550
PAO1 Ortholog Locus:PA5498
Sequence Length:924
Protein Length:307
Start: 6465347
Stop: 6464424
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08883.1|AE004962_7 (AE004962) probable adhesin [Pseudomonas aeruginosa PAO1]
Identities = 304/307 (99%), Positives = 306/307 (99%)
Sequence:
GTGACCCTGCGTCCCTTTGCCCTGCTGTCCGCCTGCTTCGCCCTGTTCCTGCTGGCTTCGCCGGCGCGCGCC
GAGGTCAGCGTGCTGACCAGCATCAAACCGCTGCAACTGGTCGCCGCGGCCATTCAGGACGGCGTCGGCCAG
CCGGACGTACTGCTGCCGCCGGGCGCCTCGCCGCACCAGTATGCCCTGCGTCCTTCCGACGTACGGCGGCTG
CGCGAGGTGCAATTGTTCTACTGGATCGGCCCGGACCTGGAGAACTTCCTGCCCAAGGTGCTCGCCGGCCGC
CAGGGCACCAGCGTCGCGGTGCAGGACCTGCCGGGCATGCACCTGCGCAAGTTCGTCAATTTCGAAGAAGAG
GAGCATGCCGGGCACGACGAGCACGACCATGACCATCGTCCCGGCATGCTCGACGCCCACCTCTGGCTGTTG
CCGGCCAACGCCCGCACCATCGCCGCGCGGATGGCCGAGGACCTGGCCCAGGTCGACCCGGCCAACGCCGGG
CGCTACCGGGCCAACCTGAAGGCCTTCGAGGAGCGCCTCGGCGGGCTCGACGGGAAACTCCGCGAACGCCTG
GGCAAGCTTGCCGGCAAGCCTTTCTTCGTCTTCCACGAAGCCTTCGACTATTTCGAGGAAGCCTACGGGTTG
CGCCATACCGGCGTGTTCGCGGTATCCGCGGAGGTCCAGCCGGGAGCACGCCATGTCGCCGCCATGCGCGCC
CAACTGAAGGCCGCCGGTCCGGCCTGCATCTTCAGCGAGCCGCCGCTTCGACCGCGGCTGGCCGACACCCTC
AGCGAAGGCCTGCCGGTGCGCCTGGCCGAACTGGACGACCTGGGCGTGAACGTGACCGTGGACGCCAACGGC
TATGAGAATCTTCTGAACAACCTGGCAGGCGAATTTGCCGGCTGTCTGGAAAAGCTCTGA
Translation:
MTLRPFALLSACFALFLLASPARAEVSVLTSIKPLQLVAAAIQDGVGQPDVLLPPGASPHQYALRPSDVRRL
REVQLFYWIGPDLENFLPKVLAGRQGTSVAVQDLPGMHLRKFVNFEEEEHAGHDEHDHDHRPGMLDAHLWLL
PANARTIAARMAEDLAQVDPANAGRYRANLKAFEERLGGLDGKLRERLGKLAGKPFFVFHEAFDYFEEAYGL
RHTGVFAVSAEVQPGARHVAAMRAQLKAAGPACIFSEPPLRPRLADTLSEGLPVRLAELDDLGVNVTVDANG
YENLLNNLAGEFAGCLEKL*
AnnotationID:2386GeneID:2378
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:23
Gene Name:
Confidence Code:3
GeneProduct:putative zinc ABC transporter, periplasmic zinc-binding protein
Cell Localization:()
Synonyms:znuA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative adhesin
Functional Category Confidence Code:5
COGs:COG4531
Secondary Functional Category(ies):motility and attachment
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65754.1|AE016201_6 (AE016774) zinc ABC transporter, periplasmic zinc-binding protein
           ZnuA, putative [Pseudomonas putida KT2440]
          Length = 302

 Score =  403 bits (1035), Expect = e-112
 Identities = 198/302 (65%), Positives = 236/302 (78%), Gaps = 3/302 (0%)

>gb|AAO58694.1| (AE016875) zinc ABC transporter, periplasmic zinc-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 311

 Score =  400 bits (1028), Expect = e-111
 Identities = 197/309 (63%), Positives = 237/309 (76%), Gaps = 5/309 (1%)

>gb|AAG56847.1|AE005408_5 (AE005408) putative adhesin [Escherichia coli O157:H7 EDL933]
          Length = 328

 Score =  224 bits (572), Expect = 4e-58
 Identities = 113/302 (37%), Positives = 179/302 (59%), Gaps = 5/302 (1%)








 
Structural Features:
COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin 
[Inorganic ion transport and metabolism]
CD-Length = 318 residues,  99.7% aligned
Score =  407 bits (1048), Expect = 7e-115
Identities = 161/318 (50%), Positives = 208/318 (65%), Gaps = 13/318 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14571




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21905




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33253




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2378_cdd.html


    		




 
URL:

















    ReferenceID:35596




  
Author/Investigator(s):
        Lewis DA, Klesney-Tait J, Lumbley SR, Ward CK, Latimer JL, Ison CA, Hansen EJ.





  
Title:
        Identification of the znuA-encoded periplasmic zinc transport protein of Haemophilus ducreyi.




  
PubMed:
        10496878


MedLine:
        




    
Source:
Infect Immun. 1999 Oct;67(10):5060-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10496878









           
Homologs By Global Alignment 

           

       



     
Gene ID:2378
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4024
                           PA5498_tr
                           translation of PA5498
                           307
                           99.02
                           99.67
                           0
                           1579.0
     

     
     
121105
                           gb|AAG08883.1|AE004962_7
                           (AE004962) probable adhesin [Pseudomonas aeruginosa PAO1]
                           307
                           98.69
                           99.67
                           0
                           1576.0
     

     
     
121106
                           gb|AAN65754.1|AE016201_6
                           (AE016774) zinc ABC transporter, periplasmic zinc-binding protein ZnuA, putative [Pseudomonas putida KT2440]
                           313
                           63.57
                           76.35
                           17
                           1042.0
     

     
     
121107
                           gb|AAO58694.1|
                           (AE016875) zinc ABC transporter, periplasmic zinc-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           313
                           63.25
                           76.03
                           8
                           1032.0
     

     
     
121109
                           gb|AAO68658.1|
                           (AE016837) high-affinity zinc uptake system periplasmic binding protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           320
                           38.12
                           55.93
                           14
                           559.0
     

     






      

          
GC ORFID: 45380How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5498Glimmer Score: 

          
Start: 5729036Stop: 5728113

          
Length: 924


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5498 translation of PA5498Homolog Bit Score 612.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6736 (ORF: BLASTX 405.0), t_PA5498 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCCTGCGTCCCTTTGCCCTGCTGTCCGCCTGCTTCGCCCTGTTCCTGCTGGCTTCGCCGGCGCGCGCC 
GAGGTCAGCGTGCTGACCAGCATCAAACCGCTGCAACTGGTCGCCGCGGCCATTCAGGACGGCGTCGGCCAG 
CCGGACGTACTGCTGCCGCCGGGCGCCTCGCCGCACCAGTATGCCCTGCGTCCTTCCGACGTACGGCGGCTG 
CGCGAGGTGCAATTGTTCTACTGGATCGGCCCGGACCTGGAGAACTTCCTGCCCAAGGTGCTCGCCGGCCGC 
CAGGGCACCAGCGTCGCGGTGCAGGACCTGCCGGGCATGCACCTGCGCAAGTTCGTCAATTTCGAAGAAGAG 
GAGCATGCCGGGCACGACGAGCACGACCATGACCATCGTCCCGGCATGCTCGACGCCCACCTCTGGCTGTTG 
CCGGCCAACGCCCGCACCATCGCCGCGCGGATGGCCGAGGACCTGGCCCAGGTCGACCCGGCCAACGCCGGG 
CGCTACCGGGCCAACCTGAAGGCCTTCGAGGAGCGCCTCGGCGGGCTCGACGGGAAACTCCGCGAACGCCTG 
GGCAAGCTTGCCGGCAAGCCTTTCTTCGTCTTCCACGAAGCCTTCGACTATTTCGAGGAAGCCTACGGGTTG 
CGCCATACCGGCGTGTTCGCGGTATCCGCGGAGGTCCAGCCGGGAGCACGCCATGTCGCCGCCATGCGCGCC 
CAACTGAAGGCCGCCGGTCCGGCCTGCATCTTCAGCGAGCCGCCGCTTCGACCGCGGCTGGCCGACACCCTC 
AGCGAAGGCCTGCCGGTGCGCCTGGCCGAACTGGACGACCTGGGCGTGAACGTGACCGTGGACGCCAACGGC 
TATGAGAATCTTCTGAACAACCTGGCAGGCGAATTTGCCGGCTGTCTGGAAAAGCTCTGA