ViewGene
Locus Name:
GeneID:
Location:

GeneID:2377
TrivialName: PA14_63330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63330
PAO1 Ortholog Locus:PA4792
Sequence Length:936
Protein Length:311
Start: 5652182
Stop: 5651247
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08178.1|AE004892_9 (AE004892) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 309/311 (99%), Positives = 310/311 (99%)
Sequence:
ATGAATCGAAGTATTGCGATCCTGCTGCTGGGCCTGTCGCTGACCGGCTGCGTCGAGGCACGCTCGGTGGTA
CCGGCGGATGGCCCGGGCCCGCTGCTGGTGGCCCATCGCGCCGGCACCGCGGACTACCCGGAGAATACCCTG
CTGGCGATCCGCAAGGCGCTGGACAACGGCGCCGACGCGCTATGGCTGTCGGTGCAGTTGAGCGCCGATGGC
CATCCGGTGCTCTATCGCCCCGCTGACCTGGCGGTCCTGACCCAGGGCGCCGGCGCGGTCGGCCAGTCGAGT
CTGGCCGAGCTGGCGCGCTTGAACGCCGGCTATATGTTCAAGGCCGAGGACGGCAGCTATCCCTACCGCCAG
AAGCCGCTGCGGATTCCTACGCTGCGCCAGGCGCTACGGGCGATCCCGCCGCAGGTGCCGGTGTTCCTCGAC
ATGAAGTCGCTGCCGGTGGAGCCGCTGGTCGATGCCGTGGCCGGCGAGCTGGAACGGCAGAAGGCCTGGTCG
CGGGTGCGTTTCTATTCCACCGAGAAGGCCGCCAACGACTACCTGACGCAGCGCTACGCGGACCGCGCGCGA
CAGTTCGAAAGCCGCGATGCGACGCGCAACCGCCTGGTCGGCCTGGCCTTCGGCGAGCGCTGCGAGGCACCG
CCGGCCGGCGGCACCTGGATGGGCATCGAGCTGCGCCGCGAACTGACGGTGACCGAGCGCTTCACCCTTGGT
GAGTCCTCCTACAAGGTGCCGGCGGCGCAGTTGTGGACGCGCAAAGCGATGGACTGCGTGCGCCGCGAGCCG
GTGAAGGTGGTGATGTTCGGCATCGAGACCGCCGAGGACTACCGCACCGCGCGCGCCCTGGGCGCCGACGCG
GTGATGAGCAACTCGCCCAGGAAGATGGAGGCGATCCGCCGCCGGGTGCTCGCCGATCAGCCCGGCGGGTAG
Translation:
MNRSIAILLLGLSLTGCVEARSVVPADGPGPLLVAHRAGTADYPENTLLAIRKALDNGADALWLSVQLSADG
HPVLYRPADLAVLTQGAGAVGQSSLAELARLNAGYMFKAEDGSYPYRQKPLRIPTLRQALRAIPPQVPVFLD
MKSLPVEPLVDAVAGELERQKAWSRVRFYSTEKAANDYLTQRYADRARQFESRDATRNRLVGLAFGERCEAP
PAGGTWMGIELRRELTVTERFTLGESSYKVPAAQLWTRKAMDCVRREPVKVVMFGIETAEDYRTARALGADA
VMSNSPRKMEAIRRRVLADQPGG*
AnnotationID:2385GeneID:2377
AnnotatorUID: diggins
Modification Date/Time: 2005-05-23 12:12:35
Gene Name:
Confidence Code:3
GeneProduct:putative glycerolphosphodiesterase
Cell Localization:()
Synonyms:PA4792
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative glycerophosphoryl diester phosphodiesterase
Functional Category Confidence Code:5
COGs:COG0584,pfam03009
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD97161.1| (BX248342) Possible glycerolphosphodiesterase [Mycobacterium bovis
           subsp. bovis AF2122/97]
          Length = 299

 Score =  228 bits (582), Expect = 3e-59
 Identities = 125/266 (46%), Positives = 165/266 (62%), Gaps = 5/266 (1%)

>emb|CAC90841.1| (AJ414151) putative exported protein [Yersinia pestis CO92]
          Length = 291

 Score =  186 bits (471), Expect = 2e-46
 Identities = 110/269 (40%), Positives = 159/269 (59%), Gaps = 13/269 (4%)








 
Structural Features:
COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase 
[Energy production and conversion]
CD-Length = 257 residues,  99.6% aligned
Score =  126 bits (318), Expect = 3e-30
Identities = 71/284 (25%), Positives = 108/284 (38%), Gaps = 34/284 (11%)

pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family.
CD-Length = 240 residues,  99.2% aligned
Score = 97.0 bits (241), Expect = 2e-21
Identities = 63/260 (24%), Positives = 100/260 (38%), Gaps = 23/260 (8%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4757




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21903




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37692




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2377_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2377
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4023
                           PA4792_tr
                           translation of PA4792
                           311
                           99.35
                           99.67
                           0
                           1578.0
     

     
     
121099
                           gb|AAG08178.1|AE004892_9
                           (AE004892) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           311
                           99.35
                           99.67
                           0
                           1578.0
     

     
     
121101
                           emb|CAD97161.1|
                           (BX248342) Possible glycerolphosphodiesterase [Mycobacterium bovis subsp. bovis AF2122/97]
                           319
                           42.63
                           57.68
                           28
                           595.0
     

     
     
121100
                           gb|AAK46621.1|
                           (AE007076) hypothetical protein [Mycobacterium tuberculosis CDC1551]
                           324
                           41.97
                           57.09
                           33
                           599.0
     

     
     
121102
                           emb|CAE13528.1|
                           (BX571863) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           325
                           38.76
                           54.15
                           41
                           541.0
     

     






      

          
GC ORFID: 45379How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4792Glimmer Score: 

          
Start: 4915862Stop: 4914927

          
Length: 936


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4792 translation of PA4792Homolog Bit Score 612.0

          
Other Homologs:  t_PA4792 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCGAAGTATTGCGATCCTGCTGCTGGGCCTGTCGCTGACCGGCTGCGTCGAGGCACGCTCGGTGGTA 
CCGGCGGATGGCCCGGGCCCGCTGCTGGTGGCCCATCGCGCCGGCACCGCGGACTACCCGGAGAATACCCTG 
CTGGCGATCCGCAAGGCGCTGGACAACGGCGCCGACGCGCTATGGCTGTCGGTGCAGTTGAGCGCCGATGGC 
CATCCGGTGCTCTATCGCCCCGCTGACCTGGCGGTCCTGACCCAGGGCGCCGGCGCGGTCGGCCAGTCGAGT 
CTGGCCGAGCTGGCGCGCTTGAACGCCGGCTATATGTTCAAGGCCGAGGACGGCAGCTATCCCTACCGCCAG 
AAGCCGCTGCGGATTCCTACGCTGCGCCAGGCGCTACGGGCGATCCCGCCGCAGGTGCCGGTGTTCCTCGAC 
ATGAAGTCGCTGCCGGTGGAGCCGCTGGTCGATGCCGTGGCCGGCGAGCTGGAACGGCAGAAGGCCTGGTCG 
CGGGTGCGTTTCTATTCCACCGAGAAGGCCGCCAACGACTACCTGACGCAGCGCTACGCGGACCGCGCGCGA 
CAGTTCGAAAGCCGCGATGCGACGCGCAACCGCCTGGTCGGCCTGGCCTTCGGCGAGCGCTGCGAGGCACCG 
CCGGCCGGCGGCACCTGGATGGGCATCGAGCTGCGCCGCGAACTGACGGTGACCGAGCGCTTCACCCTTGGT 
GAGTCCTCCTACAAGGTGCCGGCGGCGCAGTTGTGGACGCGCAAAGCGATGGACTGCGTGCGCCGCGAGCCG 
GTGAAGGTGGTGATGTTCGGCATCGAGACCGCCGAGGACTACCGCACCGCGCGCGCCCTGGGCGCCGACGCG 
GTGATGAGCAACTCGCCCAGGAAGATGGAGGCGATCCGCCGCCGGGTGCTCGCCGATCAGCCCGGCGGGTAG