ViewGene
Locus Name:
GeneID:
Location:

GeneID:2376
TrivialName: PA14_19730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19730
PAO1 Ortholog Locus:PA3427
Sequence Length:912
Protein Length:303
Start: 1701896
Stop: 1702807
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06815.1|AE004764_1 (AE004764) probable short-chain dehydrogenases [Pseudomonas aeruginosa PAO1]
Identities = 303/303 (100%), Positives = 303/303 (100%)
Sequence:
ATGAGCGATGCCCTGCGTTTCGACGACCAAGTCGTGATCGTCACCGGAGCCGGCGGCGGCCTTGGCCGCGCC
CATGCCCTGCTGTTCGCGAAGCATGGCGCCAGGGTGGTGGTCAACGACCTCGGCGGCAGCACCCATGGCGAA
GGCGCCAGTGCCTCGGCGGCGGACAAGGTGGTGGCGGAGATCCGTGCCGCCGGCGGCACCGCGGTGGCCAAC
CACGACTCGGTCACGGACGGCGGCAGGATCGTGGAGAACGCGCTGGACGCCTTCGGCCGCGTCGACGTGGTG
GTCAACAATGCCGGCATCCTGCGTGACAAGACCTTCCACAAGATGGAGGACGCCGACTGGGACCTGGTCTAC
CAGGTGCATGTCGAAGGCGCCTACAAGGTCACTCGCGCCGCCTGGCCGCACTTGCGCGAGCAGGCCTACGGG
CGGGTGGTGTTCACCTCCTCGACCTCGGGCATCTACGGCAACTTCGGCCAGAGCAACTACGGCATGGCCAAG
CTCGGCCTCTACGGCCTGACCCGCACCCTGGCCCTGGAAGGGCGCAAGAACAATATCCTGGTCAACGCCATC
GCCCCCACCGGCGGTACGCGGATGACCGAGGGGCTGATCCCGCCGCAGGTCTTCGAGCAGCTCAAGCCGGAG
CTGGTCAGCCCACTGGTGGTCTACCTCGGCAGCTCGGCCTGCGAGGATACCTCGGGGCTCTATGAGGTCGGC
GGTGGCTGGATCGGCAAGGTGCGCTGGGAGCGCAGCCTGGGCTTCGGCTTCGATCCGAAGGCCGGCTTCGAT
GCCGAGGACGTGGCCGCGCACTGGCAGCAGATCTGCGACTTCGAGAACGCCGCGCACCCGGCGGACAACGTC
GAGGCGCTCCGTGAAATGATGGCCAACCTGCAGAAGCACGCGCTCTGA
Translation:
MSDALRFDDQVVIVTGAGGGLGRAHALLFAKHGARVVVNDLGGSTHGEGASASAADKVVAEIRAAGGTAVAN
HDSVTDGGRIVENALDAFGRVDVVVNNAGILRDKTFHKMEDADWDLVYQVHVEGAYKVTRAAWPHLREQAYG
RVVFTSSTSGIYGNFGQSNYGMAKLGLYGLTRTLALEGRKNNILVNAIAPTGGTRMTEGLIPPQVFEQLKPE
LVSPLVVYLGSSACEDTSGLYEVGGGWIGKVRWERSLGFGFDPKAGFDAEDVAAHWQQICDFENAAHPADNV
EALREMMANLQKHAL*
AnnotationID:2384GeneID:2376
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 17:05:13
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, short-chain dehydrogenase/reductase family
Cell Localization:()
Synonyms:PA3427
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative 3-oxoacyl-(acyl-carrier-protein) reductase
Functional Category Confidence Code:5
COGs:COG1028
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54714.1| (AE016860) oxidoreductase, short chain dehydrogenase/reductase
           family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 306

 Score =  513 bits (1322), Expect = e-145
 Identities = 252/299 (84%), Positives = 273/299 (91%)

>gb|AAK24064.1| (AE005882) 3-oxoacyl-(acyl-carrier-protein) reductase, putative
           [Caulobacter crescentus CB15]
          Length = 301

 Score =  273 bits (698), Expect = 9e-73
 Identities = 145/274 (52%), Positives = 186/274 (67%), Gaps = 5/274 (1%)






 
Structural Features:
COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  99.6% aligned
Score =  137 bits (345), Expect = 2e-33
Identities = 89/260 (34%), Positives = 121/260 (46%), Gaps = 31/260 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4755




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21901




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32139




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2376_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2376
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4021
                           PA3427_tr
                           translation of PA3427
                           303
                           99.99
                           99.99
                           0
                           1578.0
     

     
     
121068
                           gb|AAG06815.1|AE004764_1
                           (AE004764) probable short-chain dehydrogenases [Pseudomonas aeruginosa PAO1]
                           303
                           99.99
                           99.99
                           0
                           1578.0
     

     
     
121069
                           gb|AAO54714.1|
                           (AE016860) oxidoreductase, short chain dehydrogenase/reductase family [Pseudomonas syringae pv. tomato str. DC3000]
                           306
                           82.35
                           89.54
                           3
                           1319.0
     

     
     
121071
                           emb|CAD93017.1|
                           (BX248334) PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE [Mycobacterium bovis subsp. bovis AF2122/97]
                           310
                           51.61
                           63.22
                           31
                           764.0
     

     
     
121070
                           gb|AAK44380.1|
                           (AE006926) oxidoreductase, short-chain dehydrogenase/reductase family [Mycobacterium tuberculosis CDC1551]
                           314
                           51.27
                           62.73
                           32
                           763.0
     

     






      

          
GC ORFID: 45378How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3427Glimmer Score: 

          
Start: 3252036Stop: 3251125

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3427 translation of PA3427Homolog Bit Score 612.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4352 (ORF: BLASTX 500.0), t_PA1023 (ORF: BLASTX 208.0), t_PA3427 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGATGCCCTGCGTTTCGACGACCAAGTCGTGATCGTCACCGGAGCCGGCGGCGGCCTTGGCCGCGCC 
CATGCCCTGCTGTTCGCGAAGCATGGCGCCAGGGTGGTGGTCAACGACCTCGGCGGCAGCACCCATGGCGAA 
GGCGCCAGTGCCTCGGCGGCGGACAAGGTGGTGGCGGAGATCCGTGCCGCCGGCGGCACCGCGGTGGCCAAC 
CACGACTCGGTCACGGACGGCGGCAGGATCGTGGAGAACGCGCTGGACGCCTTCGGCCGCGTCGACGTGGTG 
GTCAACAATGCCGGCATCCTGCGTGACAAGACCTTCCACAAGATGGAGGACGCCGACTGGGACCTGGTCTAC 
CAGGTGCATGTCGAAGGCGCCTACAAGGTCACTCGCGCCGCCTGGCCGCACTTGCGCGAGCAGGCCTACGGG 
CGGGTGGTGTTCACCTCCTCGACCTCGGGCATCTACGGCAACTTCGGCCAGAGCAACTACGGCATGGCCAAG 
CTCGGCCTCTACGGCCTGACCCGCACCCTGGCCCTGGAAGGGCGCAAGAACAATATCCTGGTCAACGCCATC 
GCCCCCACCGGCGGTACGCGGATGACCGAGGGGCTGATCCCGCCGCAGGTCTTCGAGCAGCTCAAGCCGGAG 
CTGGTCAGCCCACTGGTGGTCTACCTCGGCAGCTCGGCCTGCGAGGATACCTCGGGGCTCTATGAGGTCGGC 
GGTGGCTGGATCGGCAAGGTGCGCTGGGAGCGCAGCCTGGGCTTCGGCTTCGATCCGAAGGCCGGCTTCGAT 
GCCGAGGACGTGGCCGCGCACTGGCAGCAGATCTGCGACTTCGAGAACGCCGCGCACCCGGCGGACAACGTC 
GAGGCGCTCCGTGAAATGATGGCCAACCTGCAGAAGCACGCGCTCTGA