ViewGene

Locus Name:
GeneID:
Location:

GeneID:2375
TrivialName: PA14_20130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20130
PAO1 Ortholog Locus:PA3398
Sequence Length:927
Protein Length:308
Start: 1735656
Stop: 1734730
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06786.1|AE004761_2 (AE004761) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 308/308 (100%), Positives = 308/308 (100%)
Sequence:
ATGAAATTCACCCTCCGCCAGCTCGAGGTGTTCGTCGCCGTGGCCCAGCAGGAGAGCGTCTCCCGTGCCGCC
GAGGGGCTGTCGCTGTCGCAGTCGGCGACCAGCACCTCGCTCGGCGAGCTGGAGCGGCAGTTCGACTGCAAG
CTGTTCGACCGCGCCGGCAAGCGCCTGACCCTCAATGCCCTCGGCCGCCAACTGCTGCCGCAGGCGGTGGCG
CTGCTCGACCGCGGCGAGGAAATCGAGAACCTGCTCAACGGCAAGACCGCCTTCGGCTCCCTCGACCTCGGC
GCCACCCTGACCATCGGCAACTACCTGGCCACGCTGCTGATCGGCGCCTTCATGCAGCGCCAGCCGGACTGC
CGGGTGCGCCTGCACGTGCACAACACCGCCCAGGTGGTGCAGCAGGTCGCCCACTACGAGCTGGACCTGGGC
CTGATCGAGGGCGACTGCCGGCATCCGGACATCGAGGTGCAACCCTGGATGGAGGACGAACTGGTGGTGTTC
TGCGCCCCCCAGCATCCGCTGGCGCGGCGGGGCGGCGCCGATCTGGAACGGCTGACGCGGGAGGCCTGGATC
CTCCGCGAGCAGGGCTCCGGCACCCGCCTGACCTTCGACCAGGCCATGCGTCATCACCCGCGGCCGCTGAAC
ATCCGCCTGGAGCTGGAGCACACCGAGGCGATCAAGCGTGCCGTGGAGTCCGGCCTGGGCATCGGCTGCATT
TCCCGCCTGGCCCTGCGCGACGCTTTCCGCCGCGGCAGCCTGGTGCCGGTGGAAACGCCCGGCCTGGACCTG
CGCCGGCAGTTCTACTTCATCTGGCACAAGCAGAAGTACCAGACCGCGACCATGCGCGAGTTCCTCGACCTG
TGCCGCAGCGAGACCGCCGGGATCAGCCGCAGCGACGAGATCGTGCTGCCGCTGATTCCCTGA
Translation:
MKFTLRQLEVFVAVAQQESVSRAAEGLSLSQSATSTSLGELERQFDCKLFDRAGKRLTLNALGRQLLPQAVA
LLDRGEEIENLLNGKTAFGSLDLGATLTIGNYLATLLIGAFMQRQPDCRVRLHVHNTAQVVQQVAHYELDLG
LIEGDCRHPDIEVQPWMEDELVVFCAPQHPLARRGGADLERLTREAWILREQGSGTRLTFDQAMRHHPRPLN
IRLELEHTEAIKRAVESGLGIGCISRLALRDAFRRGSLVPVETPGLDLRRQFYFIWHKQKYQTATMREFLDL
CRSETAGISRSDEIVLPLIP*
AnnotationID:2383GeneID:2375
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 09:09:39
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:yeiE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03466,COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67258.1|AE016352_11 (AE016780) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 308

 Score =  497 bits (1279), Expect = e-140
 Identities = 248/307 (80%), Positives = 276/307 (89%)

>emb|CAD14812.1| (AL646062) PROBABLE TRANSCRIPTIONAL REGULATORY DNA-BINDING
           TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
          Length = 306

 Score =  229 bits (585), Expect = 1e-59
 Identities = 132/294 (44%), Positives = 178/294 (60%), Gaps = 4/294 (1%)

>gb|AAN81148.1|AE016763_107 (AE016763) Hypothetical transcriptional regulator yeiE [Escherichia
           coli CFT073]
          Length = 293

 Score =  227 bits (578), Expect = 8e-59
 Identities = 128/289 (44%), Positives = 173/289 (59%), Gaps = 3/289 (1%)
Structural Features:
pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues,  97.6% aligned
Score =  160 bits (405), Expect = 2e-40
Identities = 70/204 (34%), Positives = 100/204 (49%)

COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.6% aligned
Score =  152 bits (384), Expect = 5e-38
Identities = 96/294 (32%), Positives = 137/294 (46%), Gaps = 8/294 (2%)
Genomic Context:
Comment:
ReferenceID:4753
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21899
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32165
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2375_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2375

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4019 PA3398_tr translation of PA3398 308 99.99 99.99 0 1579.0
121043 gb|AAG06786.1|AE004761_2 (AE004761) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 308 99.99 99.99 0 1579.0
121044 gb|AAN67258.1|AE016352_11 (AE016780) transcriptional regulator, LysR family [Pseudomonas putida KT2440] 308 80.51 89.61 0 1278.0
121045 gb|AAO57482.1| (AE016870) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] 308 79.87 88.96 0 1265.0
121049 emb|CAD14812.1| (AL646062) PROBABLE TRANSCRIPTIONAL REGULATORY DNA-BINDING TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] 314 42.35 57.96 14 582.0
GC ORFID: 45377How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3398Glimmer Score:
Start: 3218276Stop: 3219202
Length: 927
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3398 translation of PA3398Homolog Bit Score 612.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4774 (ORF: BLASTX 491.0), t_PA5382 (ORF: BLASTX 234.0), t_PA3398 (ORF: GLIMMER)
GC ORF Sequence
ATGAAATTCACCCTCCGCCAGCTCGAGGTGTTCGTCGCCGTGGCCCAGCAGGAGAGCGTCTCCCGTGCCGCC
GAGGGGCTGTCGCTGTCGCAGTCGGCGACCAGCACCTCGCTCGGCGAGCTGGAGCGGCAGTTCGACTGCAAG
CTGTTCGACCGCGCCGGCAAGCGCCTGACCCTCAATGCCCTCGGCCGCCAACTGCTGCCGCAGGCGGTGGCG
CTGCTCGACCGCGGCGAGGAAATCGAGAACCTGCTCAACGGCAAGACCGCCTTCGGCTCCCTCGACCTCGGC
GCCACCCTGACCATCGGCAACTACCTGGCCACGCTGCTGATCGGCGCCTTCATGCAGCGCCAGCCGGACTGC
CGGGTGCGCCTGCACGTGCACAACACCGCCCAGGTGGTGCAGCAGGTCGCCCACTACGAGCTGGACCTGGGC
CTGATCGAGGGCGACTGCCGGCATCCGGACATCGAGGTGCAACCCTGGATGGAGGACGAACTGGTGGTGTTC
TGCGCCCCCCAGCATCCGCTGGCGCGGCGGGGCGGCGCCGATCTGGAACGGCTGACGCGGGAGGCCTGGATC
CTCCGCGAGCAGGGCTCCGGCACCCGCCTGACCTTCGACCAGGCCATGCGTCATCACCCGCGGCCGCTGAAC
ATCCGCCTGGAGCTGGAGCACACCGAGGCGATCAAGCGTGCCGTGGAGTCCGGCCTGGGCATCGGCTGCATT
TCCCGCCTGGCCCTGCGCGACGCTTTCCGCCGCGGCAGCCTGGTGCCGGTGGAAACGCCCGGCCTGGACCTG
CGCCGGCAGTTCTACTTCATCTGGCACAAGCAGAAGTACCAGACCGCGACCATGCGCGAGTTCCTCGACCTG
TGCCGCAGCGAGACCGCCGGGATCAGCCGCAGCGACGAGATCGTGCTGCCGCTGATTCCCTGA