ViewGene
Locus Name:
GeneID:
Location:

GeneID:2374
TrivialName: PA14_33560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33560
PAO1 Ortholog Locus:PA2407
Sequence Length:954
Protein Length:317
Start: 2953633
Stop: 2952680
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05795.1|AE004668_5 (AE004668) probable adhesion protein [Pseudomonas aeruginosa PAO1]
Identities = 317/317 (100%), Positives = 317/317 (100%)
Sequence:
ATGCTGTTCTCCCGTCGCTCATCCCGTCCGCGCGGCCTCGCCGCCCTCCTCCCGGGCCGCGCCCTGCTGGCC
GCCCTGCTGCTGGCCCTGCTCGCCCCGCTGGCCCAGGCCGAAGACGGCAAGCGCCTGCGCATCGGCATCACC
CTGCATCCCTACTACAGCTACGTGAGCAACATCGTCGGCGACAAGGCCGAGGTGGTGCCGCTGATCCCCGCC
GGTTTCAACCCGCATGCCTACGAGCCGCGCGCCGAGGACATCAAGCGCATCGGCACGCTCGACGTGGTGGTG
CTCAACGGCGTCGGCCACGACGATTTCGCCGAGCGCATGATCGCCTCCAGCGAAAAGCCCGGCATCCCGGTG
ATCGAGGCCAACGCCAAGGTGCCGCTGCTGGCCGCCACCGGCATGGCCGCGCGCGGCGCCGGCAAGGTGGTC
AACCCGCACACCTTCCTGTCCATCAGCGCCTCGATCACCCAGGTCAACACCATCGCCCGCGAACTGGGCAAG
CTCGACCCGGCCAACGCCAAGGCCTACACCCGCAACGCCCGGGCCTACGCCAAGCGCCTGCGGGCCCTGCGC
GCCGACGCCCTGGCGCGGCTGAACAAGGCCCCGGCCGCCGACTTCCGCGTCGCCACCATCCACGGCGCCTAC
GACTACCTGCTGCGCGAATTCGGCCTGGAAGTCACCGCCGTGGTCGAGCCGGCCCACGGCATCGAGCCGAGT
CCGAGCCAGTTGAAGAAGACCATCGACCAGCTCAAGGCGCTGGACGTGAAGGTGATCTTCTCCGAGATCGAC
TTCCCCTCCACCTACGTCGAGACCATCCAGCGCGAGTCCGGGGTGAAGCTCTATTCGCTGTCGCACATTTCC
TATGGCGACTACAGCGCCGGCAAGTACGAGGAAGAAATGGCGCGCAACCTCGACACCGTGGTCCGCGCCATC
CAGGAGTCCGGCGCATGA
Translation:
MLFSRRSSRPRGLAALLPGRALLAALLLALLAPLAQAEDGKRLRIGITLHPYYSYVSNIVGDKAEVVPLIPA
GFNPHAYEPRAEDIKRIGTLDVVVLNGVGHDDFAERMIASSEKPGIPVIEANAKVPLLAATGMAARGAGKVV
NPHTFLSISASITQVNTIARELGKLDPANAKAYTRNARAYAKRLRALRADALARLNKAPAADFRVATIHGAY
DYLLREFGLEVTAVVEPAHGIEPSPSQLKKTIDQLKALDVKVIFSEIDFPSTYVETIQRESGVKLYSLSHIS
YGDYSAGKYEEEMARNLDTVVRAIQESGA*
AnnotationID:2382GeneID:2374
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:22
Gene Name:
Confidence Code:3
GeneProduct:putative adhesion protein
Cell Localization:()
Synonyms:PA2407
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:putative ABC-type metal ion transport system, periplasmic component/surface adhesin
Functional Category Confidence Code:5
COGs:COG0803,pfam01297
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55658.1| (AE016863) cation ABC transporter, periplasmic cation-binding
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 317

 Score =  492 bits (1267), Expect = e-138
 Identities = 253/299 (84%), Positives = 270/299 (90%), Gaps = 1/299 (0%)

>gb|AAN69395.1|AE016576_5 (AE016788) cation ABC transporter, periplasmic cation-binding
           protein, putative [Pseudomonas putida KT2440]
          Length = 300

 Score =  481 bits (1238), Expect = e-135
 Identities = 246/298 (82%), Positives = 267/298 (89%)

>dbj|BAC61505.1| (AP005084) putative adhesion protein [Vibrio parahaemolyticus]
          Length = 308

 Score =  298 bits (762), Expect = 4e-80
 Identities = 144/294 (48%), Positives = 213/294 (72%), Gaps = 4/294 (1%)






 
Structural Features:
COG0803, LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin 
[Inorganic ion transport and metabolism]
CD-Length = 303 residues,  98.3% aligned
Score =  236 bits (604), Expect = 2e-63
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 8/302 (2%)

pfam01297, SBP_bac_9, Periplasmic solute binding protein family.
CD-Length = 279 residues,  98.6% aligned
Score =  171 bits (435), Expect = 8e-44
Identities = 93/281 (33%), Positives = 144/281 (51%), Gaps = 7/281 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4751




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21897




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32951




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2374_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2374
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4018
                           PA2407_tr
                           translation of PA2407
                           317
                           99.99
                           99.99
                           0
                           1578.0
     

     
     
121037
                           gb|AAG05795.1|AE004668_5
                           (AE004668) probable adhesion protein [Pseudomonas aeruginosa PAO1]
                           317
                           99.99
                           99.99
                           0
                           1578.0
     

     
     
121038
                           gb|AAO55658.1|
                           (AE016863) cation ABC transporter, periplasmic cation-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           327
                           78.28
                           83.79
                           20
                           1264.0
     

     
     
121039
                           gb|AAN69395.1|AE016576_5
                           (AE016788) cation ABC transporter, periplasmic cation-binding protein, putative [Pseudomonas putida KT2440]
                           317
                           77.60
                           84.22
                           17
                           1233.0
     

     
     
121040
                           dbj|BAC61505.1|
                           (AP005084) putative adhesion protein [Vibrio parahaemolyticus]
                           326
                           44.47
                           65.64
                           27
                           760.0
     

     






      

          
GC ORFID: 45376How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2407Glimmer Score: 

          
Start: 2000283Stop: 2001236

          
Length: 954


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2407 translation of PA2407Homolog Bit Score 612.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene484 (ORF: BLASTX 493.0), t_PA2407 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGTTCTCCCGTCGCTCATCCCGTCCGCGCGGCCTCGCCGCCCTCCTCCCGGGCCGCGCCCTGCTGGCC 
GCCCTGCTGCTGGCCCTGCTCGCCCCGCTGGCCCAGGCCGAAGACGGCAAGCGCCTGCGCATCGGCATCACC 
CTGCATCCCTACTACAGCTACGTGAGCAACATCGTCGGCGACAAGGCCGAGGTGGTGCCGCTGATCCCCGCC 
GGTTTCAACCCGCATGCCTACGAGCCGCGCGCCGAGGACATCAAGCGCATCGGCACGCTCGACGTGGTGGTG 
CTCAACGGCGTCGGCCACGACGATTTCGCCGAGCGCATGATCGCCTCCAGCGAAAAGCCCGGCATCCCGGTG 
ATCGAGGCCAACGCCAAGGTGCCGCTGCTGGCCGCCACCGGCATGGCCGCGCGCGGCGCCGGCAAGGTGGTC 
AACCCGCACACCTTCCTGTCCATCAGCGCCTCGATCACCCAGGTCAACACCATCGCCCGCGAACTGGGCAAG 
CTCGACCCGGCCAACGCCAAGGCCTACACCCGCAACGCCCGGGCCTACGCCAAGCGCCTGCGGGCCCTGCGC 
GCCGACGCCCTGGCGCGGCTGAACAAGGCCCCGGCCGCCGACTTCCGCGTCGCCACCATCCACGGCGCCTAC 
GACTACCTGCTGCGCGAATTCGGCCTGGAAGTCACCGCCGTGGTCGAGCCGGCCCACGGCATCGAGCCGAGT 
CCGAGCCAGTTGAAGAAGACCATCGACCAGCTCAAGGCGCTGGACGTGAAGGTGATCTTCTCCGAGATCGAC 
TTCCCCTCCACCTACGTCGAGACCATCCAGCGCGAGTCCGGGGTGAAGCTCTATTCGCTGTCGCACATTTCC 
TATGGCGACTACAGCGCCGGCAAGTACGAGGAAGAAATGGCGCGCAACCTCGACACCGTGGTCCGCGCCATC 
CAGGAGTCCGGCGCATGA