ViewGene
Locus Name:
GeneID:
Location:

GeneID:2373
TrivialName: PA14_34340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34340
PAO1 Ortholog Locus:PA2344
Sequence Length:933
Protein Length:310
Start: 3055134
Stop: 3054202
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05732.1|AE004660_8 (AE004660) fructokinase [Pseudomonas aeruginosa PAO1]
Identities = 308/310 (99%), Positives = 308/310 (99%)
Sequence:
ATGTACCTGGTGTGTGGCGAGGCCCTTTTCGATGTCTTCAGCCTGGAAAGCGCTGCGCGCAGCAACGAGCTG
GGCTTCACCGCGATCGCCGGCGGCTCGCCGTTCAACGTCGCCGTCGGCCTGCGCCGGCTGGGCGTGGAGGCG
GCGCTGTTCGGCGGGCTGTCCAGCGACTACCTGGGCGCGCGGCTGCGCCGGGTGCTCGAAGAAGAAGGCGTG
GACTGCGGCTTCCTGGTGCCCAGCGACGCCCCGACCACCCTGGCGATGGTCGGCCTCGACGCCAGCGGCTCG
GCACAATACCAGTTCCGCGGCGAGGGCTGCGCCGACCGCCAGGTGCGCCTGGAACACCTGCCGACGCTGGAT
GGGCGGATACGCGGGCTGCACGTCGGCTCCTACACCCTGGTGGTGACGCCGGTGGCCGACACCCTGCTGGCG
CTGGTCCGGCGCGAGAGCGGCCGGCGCCTGGTCAGCCTGGATCCCAACGTGCGCCTCGACCCGCAGCCGGAC
ATCGACCTCTGGCGGCGCCGGGTCGAGGCCTTCGCCAGTCATGCGCACCTGATCAAAGCCAGCGAGGAAGAC
CTGGCCCTGCTCTACCCCGACCGCGATCCCGGCGAGGTGGCCCGCGGCTGGCTGAACCCGCGCTGCCGGCTG
GTCTTCGTCACCCACGGCGGCGCCGGCGCCAGCGTGCACTGCACCCACGGCAGCTGGAGTCGCCCGGCGGAT
ACCGCCCTGGCGCTGCGCGATACGGTCGGCGCCGGCGATACCTTCCAGGCGGCGACCCTCGCCTACCTCCGC
CGCCTCGACGCCGACAGCCCGGCCGGGCTAGCCGCGCTGTCGCGGGAAGCGATCGACGCGATGCTCGCCTTC
GCCATCCGCGCGGCGGCGGTCACCTGCTCGCGGGTGGGGCCGGACCTGCCGTTCGCCCACGAGCTTTGA
Translation:
MYLVCGEALFDVFSLESAARSNELGFTAIAGGSPFNVAVGLRRLGVEAALFGGLSSDYLGARLRRVLEEEGV
DCGFLVPSDAPTTLAMVGLDASGSAQYQFRGEGCADRQVRLEHLPTLDGRIRGLHVGSYTLVVTPVADTLLA
LVRRESGRRLVSLDPNVRLDPQPDIDLWRRRVEAFASHAHLIKASEEDLALLYPDRDPGEVARGWLNPRCRL
VFVTHGGAGASVHCTHGSWSRPADTALALRDTVGAGDTFQAATLAYLRRLDADSPAGLAALSREAIDAMLAF
AIRAAAVTCSRVGPDLPFAHEL*
AnnotationID:2381GeneID:2373
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 07:07:46
Gene Name:mtlZ
Confidence Code:2
GeneProduct:fructokinase
Cell Localization:()
Synonyms:frk
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00294,COG0524
Secondary Functional Category(ies):
EC Number:2.7.1.4
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56203.1| (AE016865) fructokinase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 312

 Score =  401 bits (1031), Expect = e-111
 Identities = 202/312 (64%), Positives = 240/312 (76%), Gaps = 3/312 (0%)

>gb|AAC04474.1| (AF007800) fructokinase [Pseudomonas fluorescens]
          Length = 312

 Score =  385 bits (988), Expect = e-106
 Identities = 197/312 (63%), Positives = 239/312 (76%), Gaps = 3/312 (0%)






 
Structural Features:
pfam00294, PfkB, pfkB family carbohydrate kinase. 
CD-Length = 298 residues,  98.3% aligned
Score =  130 bits (329), Expect = 2e-31
Identities = 89/312 (28%), Positives = 126/312 (40%), Gaps = 25/312 (8%)

COG0524, RbsK, Sugar kinases, ribokinase family 
[Carbohydrate transport and metabolism]
CD-Length = 311 residues,  96.5% aligned
Score =  124 bits (313), Expect = 1e-29







   
Genomic Context:






   
Comment:


















    ReferenceID:4749




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21895




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32454




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2373_cdd.html


    		




 
URL:

















    ReferenceID:34479




  
Author/Investigator(s):
        Brunker P, Altenbuchner J, Mattes R.





  
Title:
        Structure and function of the genes involved in mannitol, arabitol and glucitol utilization from Pseudomonas fluorescens DSM50106.




  
PubMed:
        9461423


MedLine:
        




    
Source:
Gene. 1998 Jan 5;206(1):117-26.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9461423









           
Homologs By Global Alignment 

           

       



     
Gene ID:2373
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4017
                           PA2344_tr
                           translation of PA2344
                           310
                           99.35
                           99.35
                           0
                           1577.0
     

     
     
121034
                           gb|AAG05732.1|AE004660_8
                           (AE004660) fructokinase [Pseudomonas aeruginosa PAO1]
                           310
                           99.35
                           99.35
                           0
                           1577.0
     

     
     
121035
                           gb|AAO56203.1|
                           (AE016865) fructokinase [Pseudomonas syringae pv. tomato str. DC3000]
                           313
                           64.53
                           76.67
                           4
                           1037.0
     

     
     
121036
                           gb|AAC04474.1|
                           (AF007800) fructokinase [Pseudomonas fluorescens]
                           313
                           62.93
                           76.35
                           4
                           994.0
     

     






      

          
GC ORFID: 45375How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2344Glimmer Score: 

          
Start: 1898782Stop: 1899714

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2344 translation of PA2344Homolog Bit Score 612.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6719 (ORF: BLASTX 399.0), t_PA2344 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACCTGGTGTGTGGCGAGGCCCTTTTCGATGTCTTCAGCCTGGAAAGCGCTGCGCGCAGCAACGAGCTG 
GGCTTCACCGCGATCGCCGGCGGCTCGCCGTTCAACGTCGCCGTCGGCCTGCGCCGGCTGGGCGTGGAGGCG 
GCGCTGTTCGGCGGGCTGTCCAGCGACTACCTGGGCGCGCGGCTGCGCCGGGTGCTCGAAGAAGAAGGCGTG 
GACTGCGGCTTCCTGGTGCCCAGCGACGCCCCGACCACCCTGGCGATGGTCGGCCTCGACGCCAGCGGCTCG 
GCACAATACCAGTTCCGCGGCGAGGGCTGCGCCGACCGCCAGGTGCGCCTGGAACACCTGCCGACGCTGGAT 
GGGCGGATACGCGGGCTGCACGTCGGCTCCTACACCCTGGTGGTGACGCCGGTGGCCGACACCCTGCTGGCG 
CTGGTCCGGCGCGAGAGCGGCCGGCGCCTGGTCAGCCTGGATCCCAACGTGCGCCTCGACCCGCAGCCGGAC 
ATCGACCTCTGGCGGCGCCGGGTCGAGGCCTTCGCCAGTCATGCGCACCTGATCAAAGCCAGCGAGGAAGAC 
CTGGCCCTGCTCTACCCCGACCGCGATCCCGGCGAGGTGGCCCGCGGCTGGCTGAACCCGCGCTGCCGGCTG 
GTCTTCGTCACCCACGGCGGCGCCGGCGCCAGCGTGCACTGCACCCACGGCAGCTGGAGTCGCCCGGCGGAT 
ACCGCCCTGGCGCTGCGCGATACGGTCGGCGCCGGCGATACCTTCCAGGCGGCGACCCTCGCCTACCTCCGC 
CGCCTCGACGCCGACAGCCCGGCCGGGCTAGCCGCGCTGTCGCGGGAAGCGATCGACGCGATGCTCGCCTTC 
GCCATCCGCGCGGCGGCGGTCACCTGCTCGCGGGTGGGGCCGGACCTGCCGTTCGCCCACGAGCTTTGA