ViewGene
Locus Name:
GeneID:
Location:

GeneID:2372
TrivialName: PA14_37980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37980
PAO1 Ortholog Locus:PA2051
Sequence Length:954
Protein Length:317
Start: 3389204
Stop: 3388251
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05439.1|AE004631_8 (AE004631) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 311/317 (98%), Positives = 315/317 (99%)
Sequence:
ATGAGACAGGGAAGGCGAGAACGCATCCTCGACGAAGCGGCGCAGTGGATGGCGCTGCTGCAATCCGGCCAT
GCCGGCGCCGAGGAGCGCCTGGCGTTCCAGCAGTGGCGCCAGGCCGACGCCGAGCACGGTGCGGTGTTCGAC
CGGCTCAGCCTGGGCTTGCAGTCGTTTCGCGACGAGCCCTTGCACGGCTTGCGCGCCGAGCAATTGATCGGA
GCCCTCGAGGCGCCGTCCGCCCGTCGCCGGTTTCTCCAGCGCAGCCTCGGCCTGGCGGCGTTCGGCGTGGCG
ACGCTGGCGCTGGGGCGGATCGGCATCGTCGGCTTCCCCTGGCCCGGCGACCTGTATACCGGCACCGGACAA
CGCCAGAGTTTCCGCCTGGAGGATGGCAGCCAACTGGTGCTGGACGCGCGCAGCCGGGTACGCCCCGAATTC
GATGGCTACCGGCGTCGCCTGCGCTTACGCGAGGGGCGCCTGCTGGTTGACGTGGCACGGGAACCGGCGCGG
CCGTTCGTCGTCGACACCGGGCGCGGCCAGGTCGAGGCGCAGGGAACCCGCTTCCAGGTCAGCGATGACGGC
GCCAGCTCGCGAGTGGTGGTGCTCGAGTCGCGGGTGCGGATCACCACTGCCGACGGACGGCAATGCCTGCTG
GAGCGCGGCCAGAGCGCGCGTTTCGACGCCTCGGCGATTCTCGCCCGAGGTCCTGCCGAAGGCGGCGAGAGC
GCCTGGCTGGATGGCCGGCTGGAGGTCCGCGACCGTCCGCTGGGGGAGGTACTGGAGGCGTTGCGCGCCTAT
CGCCGCGGCATCGTCAGCGTCGCCGACGACGCGGCGGCGCTGCGCGTCAGTGGTATCTACCCGCTGGACGAC
AGCGGCGTGGCGCTGGCATTGCTGGAGCAGAGCCTGCCGATCCGGATCGACTACCACGGGCCCTACTGGGTC
AGCATCGCCAGCCGCTGA
Translation:
MRQGRRERILDEAAQWMALLQSGHAGAEERLAFQQWRQADAEHGAVFDRLSLGLQSFRDEPLHGLRAEQLIG
ALEAPSARRRFLQRSLGLAAFGVATLALGRIGIVGFPWPGDLYTGTGQRQSFRLEDGSQLVLDARSRVRPEF
DGYRRRLRLREGRLLVDVAREPARPFVVDTGRGQVEAQGTRFQVSDDGASSRVVVLESRVRITTADGRQCLL
ERGQSARFDASAILARGPAEGGESAWLDGRLEVRDRPLGEVLEALRAYRRGIVSVADDAAALRVSGIYPLDD
SGVALALLEQSLPIRIDYHGPYWVSIASR*
AnnotationID:2380GeneID:2372
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:43
Gene Name:
Confidence Code:3
GeneProduct:putative Fe2+-dicitrate sensor, membrane component
Cell Localization:()
Synonyms:PA2051
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04773,COG3712
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam04773, FecR, FecR protein
CD-Length = 323 residues,  98.5% aligned
Score =  248 bits (635), Expect = 6e-67
Identities = 131/318 (41%), Positives = 166/318 (52%), Gaps = 8/318 (2%)

COG3712, FecR, Fe2+-dicitrate sensor, membrane component 
[Inorganic ion transport and metabolism / Signal transduction mechanisms]
CD-Length = 322 residues,  98.4% aligned
Score =  230 bits (589), Expect = 1e-61
Identities = 136/320 (42%), Positives = 176/320 (55%), Gaps = 7/320 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4747




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21893




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32653




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2372_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2372
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4015
                           PA2051_tr
                           translation of PA2051
                           317
                           98.10
                           99.36
                           0
                           1578.0
     

     
     
121032
                           gb|AAG05439.1|AE004631_8
                           (AE004631) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           317
                           98.10
                           99.36
                           0
                           1578.0
     

     
     
4016
                           PA2094_tr
                           translation of PA2094
                           318
                           39.62
                           57.54
                           1
                           592.0
     

     
     
121033
                           gb|AAG05482.1|AE004637_2
                           (AE004637) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           318
                           39.62
                           57.54
                           1
                           592.0
     

     






      

          
GC ORFID: 45374How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2051Glimmer Score: 

          
Start: 1564706Stop: 1565659

          
Length: 954


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2051 translation of PA2051Homolog Bit Score 612.0

          
Other Homologs:  t_PA2094 (ORF: BLASTX 234.0), t_PA2051 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGACAGGGAAGGCGAGAACGCATCCTCGACGAAGCGGCGCAGTGGATGGCGCTGCTGCAATCCGGCCAT 
GCCGGCGCCGAGGAGCGCCTGGCGTTCCAGCAGTGGCGCCAGGCCGACGCCGAGCACGGTGCGGTGTTCGAC 
CGGCTCAGCCTGGGCTTGCAGTCGTTTCGCGACGAGCCCTTGCACGGCTTGCGCGCCGAGCAATTGATCGGA 
GCCCTCGAGGCGCCGTCCGCCCGTCGCCGGTTTCTCCAGCGCAGCCTCGGCCTGGCGGCGTTCGGCGTGGCG 
ACGCTGGCGCTGGGGCGGATCGGCATCGTCGGCTTCCCCTGGCCCGGCGACCTGTATACCGGCACCGGACAA 
CGCCAGAGTTTCCGCCTGGAGGATGGCAGCCAACTGGTGCTGGACGCGCGCAGCCGGGTACGCCCCGAATTC 
GATGGCTACCGGCGTCGCCTGCGCTTACGCGAGGGGCGCCTGCTGGTTGACGTGGCACGGGAACCGGCGCGG 
CCGTTCGTCGTCGACACCGGGCGCGGCCAGGTCGAGGCGCAGGGAACCCGCTTCCAGGTCAGCGATGACGGC 
GCCAGCTCGCGAGTGGTGGTGCTCGAGTCGCGGGTGCGGATCACCACTGCCGACGGACGGCAATGCCTGCTG 
GAGCGCGGCCAGAGCGCGCGTTTCGACGCCTCGGCGATTCTCGCCCGAGGTCCTGCCGAAGGCGGCGAGAGC 
GCCTGGCTGGATGGCCGGCTGGAGGTCCGCGACCGTCCGCTGGGGGAGGTACTGGAGGCGTTGCGCGCCTAT 
CGCCGCGGCATCGTCAGCGTCGCCGACGACGCGGCGGCGCTGCGCGTCAGTGGTATCTACCCGCTGGACGAC 
AGCGGCGTGGCGCTGGCATTGCTGGAGCAGAGCCTGCCGATCCGGATCGACTACCACGGGCCCTACTGGGTC 
AGCATCGCCAGCCGCTGA