ViewGene
Locus Name:
GeneID:
Location:

GeneID:237
TrivialName: PA14_61850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61850
PAO1 Ortholog Locus:PA4675
Sequence Length:2229
Protein Length:742
Start: 5515120
Stop: 5517348
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08062.1|AE004881_5 (AE004881) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
Identities = 738/742 (99%), Positives = 741/742 (99%)
Sequence:
ATGCCCCGCTCCATCCCTTCGCGCCCGGCTCCCCTGGCGCTTTCCCTGTCCCTCTTCGCTTCGTTTTCCGCT
CCTGCGCTGGCTGCCGATCCGGTGGAGCAGCAGATGGTGGTGATCGGCTCGCGCGCGCCGACCAGCATCAGC
GAGTTGCCCGGCACGGTCTGGGTGATCGAGCGCGAGCAACTGGACCAGCAGACCCAGGCCGGCGTGCCGCTG
AAGGAGGCGTTGGGACAATTGATCCCGGGCCTGGATATCGGCTCCCAGGGTCGTACCAACAACGGGCAGAAC
CTGCGCGGACGCAGCGTGCTGGTGATGATCGACGGGGTGTCGCTGAACAGTTCGCGGGGCATCAGCCGGCAG
TTCGACTCCATCGACCCATTCAACATCGAGCGCATCGAGGTGATGTCCGGCGCCAGCGCGGTGTACGGCGGC
GGCGCCACCGGCGGGATCATCAACATCGTGACCAAGAAGGGCGTCGGCGGCGACACTCGCTTCAATACCGAG
CTGGGCGCCCGCAGCGGCTTCCAGAGCCATGAGGACCATGACCTGCGCGCGGCGCAGTCGATCAGCGGCGGC
AACGACCTGTTCAACGGCCGCCTGGCCATCGCCTACCAGAAGAACGGCGCGGCCTACGACGGCAATGGCGAC
CAGGTACTGACGGACATCACCCAGACCGACCTACAGTACAACAGGTCGGTGGACCTGATGGGCAGCCTTGGC
TTCACTTTCGCCAATGGCCACAGCCTCGATCTCGGCCTGCAGTACTACGACTCCGGCTACGACGGCGACCGC
GGCCTCGATCTCGGGCGCAACTTCGACGCCCTGCGTGGACGGGCACCCTATTCGATCAAGGGCGGCGTCGAC
CTCGACCGCGAGCCGGAAAGCAAGCGCCATCAGTTCAACGCCACCTACCATGCGCCGGAAGTGCTGGGTCAC
GACCTCTACCTGCAGGCCTACTACCGCAACGAGAAGATGGCCTTCAACCCCTTCCCCACCATCCGCTACAGC
AATAGTGGCGCAATCAACTACGGCACTTCCTACTACTCGGCCTCGCAGCAGGACACTGACTACTACGGGATG
AAACTGGCCCTGGTGAAGACCTGGGAGCGCGCCAGCCTGACCTACGGGGTGGACCTGGACCGGGAAAAATTC
ACGTCCGACCAGATGCTCTTCAACCTGCCGCTCGCCGCCGCCAGCGGCGGGCTGGTAGCCAGTGAACAGGCC
AAGCTGGGCCGCTACCCGGACATCGATACCGACAGCCGCGCCTTCTTCCTCCAGGGCAGTTGGAAGGCCACC
GACGACCTGACCCTGAGCGCCGGCGTGCGGCGCCAGTCGATGAGCACCGACGTCAGCGACTTCGTTGCGGCG
AACCAGCAGATCCTCATCGCCAACGGCCTTGGCAAGACCGCCGACGCGGTTCCGGGCGGGAGCAAGGACTAC
GACGTCAACCTGGTCAACGTCGGCGCCATCTACAAGCTGAACCTGCAACAACAGGTCTGGGCCAACTACAGC
GAAGGCTTCGAGCTGCCGGACCCGGCCAAGTACTACGGTTTCGGACGCTACGGCGCAGCCGACGGCAATGGC
CACTACCCGCTGCTACAGGGGGTCAGCGTGAACGACTCGCCGCTGGACGGGATCAAGACCAAGCAGGTCGAG
CTGGGCTGGCGGCACACCGACGGTGCCCTGGATACCCAGGTGGCGGCGTTCTATTCCTGGTCGGACAAGAGC
ATCAAGTACGACTCGAAGACCCTGGCGGTGCTGCAGCAGGACACCAAGAAGCGCAACTACGGCCTGGAGGGC
CAGGCTACCTACTGGCTGGACGATCACTGGCAGCTCGGCGTCAACGGCCTGGCCATCCGCTCCCAGGAGAAG
GTCGACGGCCGCTGGCTGAAGCAGGACGTGACCTCGGCCAGCCCATCCAAGGCCGGCGCCTTCGTCGGCTGG
AAGGACGACCAGCGCAGCCTGCGCCTGCAGGGCGTGCGCACCTTCAACCTGAACGACGAGCCGGGCAACAAG
ATCGACGGCTACGCGCTGTTCGACCTGCTCGGCACCCAGGCGCTGCCGGTGGGCACCCTCACCGCGGGCATC
CAGAACCTGCTGGACAAGGACTACACCACGGTCTGGGGACAACGCGCCCAGGTCTACTACGGCGGGCTCGCA
CCAGCGGGACTGTTCGACTACAAGGGACGGGGGCGGACCTACAGCCTGACGTATAGCGTGGAGTTCTGA
Translation:
MPRSIPSRPAPLALSLSLFASFSAPALAADPVEQQMVVIGSRAPTSISELPGTVWVIEREQLDQQTQAGVPL
KEALGQLIPGLDIGSQGRTNNGQNLRGRSVLVMIDGVSLNSSRGISRQFDSIDPFNIERIEVMSGASAVYGG
GATGGIINIVTKKGVGGDTRFNTELGARSGFQSHEDHDLRAAQSISGGNDLFNGRLAIAYQKNGAAYDGNGD
QVLTDITQTDLQYNRSVDLMGSLGFTFANGHSLDLGLQYYDSGYDGDRGLDLGRNFDALRGRAPYSIKGGVD
LDREPESKRHQFNATYHAPEVLGHDLYLQAYYRNEKMAFNPFPTIRYSNSGAINYGTSYYSASQQDTDYYGM
KLALVKTWERASLTYGVDLDREKFTSDQMLFNLPLAAASGGLVASEQAKLGRYPDIDTDSRAFFLQGSWKAT
DDLTLSAGVRRQSMSTDVSDFVAANQQILIANGLGKTADAVPGGSKDYDVNLVNVGAIYKLNLQQQVWANYS
EGFELPDPAKYYGFGRYGAADGNGHYPLLQGVSVNDSPLDGIKTKQVELGWRHTDGALDTQVAAFYSWSDKS
IKYDSKTLAVLQQDTKKRNYGLEGQATYWLDDHWQLGVNGLAIRSQEKVDGRWLKQDVTSASPSKAGAFVGW
KDDQRSLRLQGVRTFNLNDEPGNKIDGYALFDLLGTQALPVGTLTAGIQNLLDKDYTTVWGQRAQVYYGGLA
PAGLFDYKGRGRTYSLTYSVEF*
AnnotationID:247GeneID:237
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 07:07:11
Gene Name:
Confidence Code:3
GeneProduct:putative TonB-dependent receptor
Cell Localization:()
Synonyms:iutA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative ferric siderophore receptor
Functional Category Confidence Code:5
COGs:cd01347,pfam00593
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67806.1|AE016411_11 (AE016782) outer membrane ferric siderophore receptor [Pseudomonas
           putida KT2440]
          Length = 817

 Score =  694 bits (1790), Expect = 0.0
 Identities = 371/734 (50%), Positives = 475/734 (64%), Gaps = 41/734 (5%)

>gb|AAP19030.1| (AE016991) putative ferric siderophore receptor [Shigella flexneri
           2a str. 2457T]
          Length = 731

 Score =  660 bits (1704), Expect = 0.0
 Identities = 351/735 (47%), Positives = 474/735 (64%), Gaps = 13/735 (1%)

>dbj|BAB83802.1| (AB066099) ferric aerobactin receptor precursur IutA [Vibrio
           parahaemolyticus]
          Length = 725

 Score =  647 bits (1669), Expect = 0.0
 Identities = 340/736 (46%), Positives = 456/736 (61%), Gaps = 32/736 (4%)






 
Structural Features:
cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channel
CD-Length = 672 residues, 100.0% aligned
Score =  259 bits (662), Expect = 9e-70

pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues,  99.9% aligned
Score =  204 bits (518), Expect = 5e-53
Identities = 171/764 (22%), Positives = 258/764 (33%), Gaps = 123/764 (16%)






   
Genomic Context:






   
Comment:


















    ReferenceID:477




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17619




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37612




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:237_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:237
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
402
                           PA4675_tr
                           translation of PA4675
                           742
                           99.46
                           99.86
                           0
                           3851.0
     

     
     
22882
                           gb|AAG08062.1|AE004881_5
                           (AE004881) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
                           742
                           99.46
                           99.86
                           0
                           3851.0
     

     
     
22885
                           gb|AAL01550.1|
                           (AY046057) IutA [Escherichia fergusonii]
                           746
                           48.92
                           63.00
                           21
                           1742.0
     

     
     
22884
                           gb|AAR07714.1|
                           (AY378100) IutA [Klebsiella pneumoniae]
                           748
                           48.39
                           64.03
                           21
                           1764.0
     

     
     
22894
                           emb|CAA29297.1|
                           (X05874) receptor protein precursor [Escherichia coli]
                           748
                           46.92
                           62.29
                           22
                           1676.0
     

     






      

          
GC ORFID: 43239How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4675Glimmer Score: 

          
Start: 4778800Stop: 4781028

          
Length: 2229


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4675 translation of PA4675Homolog Bit Score 1488.0

          
Other Homologs:  t_PA4675 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGCTCCATCCCTTCGCGCCCGGCTCCCCTGGCGCTTTCCCTGTCCCTCTTCGCTTCGTTTTCCGCT 
CCTGCGCTGGCTGCCGATCCGGTGGAGCAGCAGATGGTGGTGATCGGCTCGCGCGCGCCGACCAGCATCAGC 
GAGTTGCCCGGCACGGTCTGGGTGATCGAGCGCGAGCAACTGGACCAGCAGACCCAGGCCGGCGTGCCGCTG 
AAGGAGGCGTTGGGACAATTGATCCCGGGCCTGGATATCGGCTCCCAGGGTCGTACCAACAACGGGCAGAAC 
CTGCGCGGACGCAGCGTGCTGGTGATGATCGACGGGGTGTCGCTGAACAGTTCGCGGGGCATCAGCCGGCAG 
TTCGACTCCATCGACCCATTCAACATCGAGCGCATCGAGGTGATGTCCGGCGCCAGCGCGGTGTACGGCGGC 
GGCGCCACCGGCGGGATCATCAACATCGTGACCAAGAAGGGCGTCGGCGGCGACACTCGCTTCAATACCGAG 
CTGGGCGCCCGCAGCGGCTTCCAGAGCCATGAGGACCATGACCTGCGCGCGGCGCAGTCGATCAGCGGCGGC 
AACGACCTGTTCAACGGCCGCCTGGCCATCGCCTACCAGAAGAACGGCGCGGCCTACGACGGCAATGGCGAC 
CAGGTACTGACGGACATCACCCAGACCGACCTACAGTACAACAGGTCGGTGGACCTGATGGGCAGCCTTGGC 
TTCACTTTCGCCAATGGCCACAGCCTCGATCTCGGCCTGCAGTACTACGACTCCGGCTACGACGGCGACCGC 
GGCCTCGATCTCGGGCGCAACTTCGACGCCCTGCGTGGACGGGCACCCTATTCGATCAAGGGCGGCGTCGAC 
CTCGACCGCGAGCCGGAAAGCAAGCGCCATCAGTTCAACGCCACCTACCATGCGCCGGAAGTGCTGGGTCAC 
GACCTCTACCTGCAGGCCTACTACCGCAACGAGAAGATGGCCTTCAACCCCTTCCCCACCATCCGCTACAGC 
AATAGTGGCGCAATCAACTACGGCACTTCCTACTACTCGGCCTCGCAGCAGGACACTGACTACTACGGGATG 
AAACTGGCCCTGGTGAAGACCTGGGAGCGCGCCAGCCTGACCTACGGGGTGGACCTGGACCGGGAAAAATTC 
ACGTCCGACCAGATGCTCTTCAACCTGCCGCTCGCCGCCGCCAGCGGCGGGCTGGTAGCCAGTGAACAGGCC 
AAGCTGGGCCGCTACCCGGACATCGATACCGACAGCCGCGCCTTCTTCCTCCAGGGCAGTTGGAAGGCCACC 
GACGACCTGACCCTGAGCGCCGGCGTGCGGCGCCAGTCGATGAGCACCGACGTCAGCGACTTCGTTGCGGCG 
AACCAGCAGATCCTCATCGCCAACGGCCTTGGCAAGACCGCCGACGCGGTTCCGGGCGGGAGCAAGGACTAC 
GACGTCAACCTGGTCAACGTCGGCGCCATCTACAAGCTGAACCTGCAACAACAGGTCTGGGCCAACTACAGC 
GAAGGCTTCGAGCTGCCGGACCCGGCCAAGTACTACGGTTTCGGACGCTACGGCGCAGCCGACGGCAATGGC 
CACTACCCGCTGCTACAGGGGGTCAGCGTGAACGACTCGCCGCTGGACGGGATCAAGACCAAGCAGGTCGAG 
CTGGGCTGGCGGCACACCGACGGTGCCCTGGATACCCAGGTGGCGGCGTTCTATTCCTGGTCGGACAAGAGC 
ATCAAGTACGACTCGAAGACCCTGGCGGTGCTGCAGCAGGACACCAAGAAGCGCAACTACGGCCTGGAGGGC 
CAGGCTACCTACTGGCTGGACGATCACTGGCAGCTCGGCGTCAACGGCCTGGCCATCCGCTCCCAGGAGAAG 
GTCGACGGCCGCTGGCTGAAGCAGGACGTGACCTCGGCCAGCCCATCCAAGGCCGGCGCCTTCGTCGGCTGG 
AAGGACGACCAGCGCAGCCTGCGCCTGCAGGGCGTGCGCACCTTCAACCTGAACGACGAGCCGGGCAACAAG 
ATCGACGGCTACGCGCTGTTCGACCTGCTCGGCACCCAGGCGCTGCCGGTGGGCACCCTCACCGCGGGCATC 
CAGAACCTGCTGGACAAGGACTACACCACGGTCTGGGGACAACGCGCCCAGGTCTACTACGGCGGGCTCGCA 
CCAGCGGGACTGTTCGACTACAAGGGACGGGGGCGGACCTACAGCCTGACGTATAGCGTGGAGTTCTGA