ViewGene
Locus Name:
GeneID:
Location:

GeneID:2369
TrivialName: PA14_26150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26150
PAO1 Ortholog Locus:PA2930
Sequence Length:927
Protein Length:308
Start: 2283674
Stop: 2282748
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06318.1|AE004719_4 (AE004719) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 301/308 (97%), Positives = 303/308 (98%)
Sequence:
ATGAATACTGACAATCATGGTGAGGAAAACTCACCATTCAGGCGCCGCCGCCTGCCCTCGCTGAACGCCCTG
CGCTGCTTCGAGGCCGCCGCCCGCCTGGAGAACTTTTCCCGTGCCGCCGAGGCCCTGTGCCTGACCCACGGC
GCCATCAGCCGCGCCGTGCGGACCCTGGAGGAGGAACTCGGTTGTGCGCTCTTCGAACGCCGCGGCCAGCGG
GTTTTCCTCAGCGAGGCCGGCAGGCGCCTGCTCGCCGGCACCGGCCCGGCCCTCGACCTGATCGAGCGCACC
GGCGAGGCCCTGCGCGCGGAGGCCGGACCCACCGCGGTGGTGCTGTCCTGCGAACCGACCTTGCTGATGCGC
TGGCTGATCCCGCGGATCGCCGGATTCATGCAGGAACAGCCACGACTGTCGATCCAACTGGTCGCCGGCGGC
GGGCCGTTCGCCTTCGGCCGCGGCATCGACCTGGCGATCCGCCGCAACGACTTCCCCTGGCCGCCCGGCAGC
CATGCCCACTGGCTGTTCGACGAGCAGATCGGGCCGGTCTGCCGGGCGAGCGACGTCGAACGGCATTTCCAC
CTCGATGCAGACCCGCCCGGGCTTCGCGCCGTCGCACCGCGCCTGCACACGGCGACCCGCCCGCAAGCCTGG
AACACCTGGACCCGTCTCGCCGGACAGGCGCCGGCGACGACCGAAGGGCAGCGCTTCGAGCACTTCTACCTG
AGCCTGCAGGCGGCCGGCGCCGGACTCGGCGTAGCCATCGGCCCCTGGCAACTGGTGCGCGACGATCTGTCC
GCCGGCCTGCTGGCGGCGCCGCTGGGATTCCTCGCCGACGGCAGCAGCTATCACCTGCTGACCCCGCGACCG
TTGCAGGCCGGAGAGCCTGCCACCCTGCTGCTGGAATGGCTGCGCCGCAGCGCGGCGGCCTGA
Translation:
MNTDNHGEENSPFRRRRLPSLNALRCFEAAARLENFSRAAEALCLTHGAISRAVRTLEEELGCALFERRGQR
VFLSEAGRRLLAGTGPALDLIERTGEALRAEAGPTAVVLSCEPTLLMRWLIPRIAGFMQEQPRLSIQLVAGG
GPFAFGRGIDLAIRRNDFPWPPGSHAHWLFDEQIGPVCRASDVERHFHLDADPPGLRAVAPRLHTATRPQAW
NTWTRLAGQAPATTEGQRFEHFYLSLQAAGAGLGVAIGPWQLVRDDLSAGLLAAPLGFLADGSSYHLLTPRP
LQAGEPATLLLEWLRRSAAA*
AnnotationID:2377GeneID:2369
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 10:10:37
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2930
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66323.1|AE016260_9 (AE016776) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 305

 Score =  256 bits (654), Expect = 1e-67
 Identities = 141/287 (49%), Positives = 179/287 (62%), Gaps = 12/287 (4%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription] 
CD-Length = 297 residues,  98.7% aligned
Score =  123 bits (309), Expect = 2e-29
Identities = 87/296 (29%), Positives = 119/296 (40%), Gaps = 9/296 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4741




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21887




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36126




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2369_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2369
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4012
                           PA2930_tr
                           translation of PA2930
                           308
                           97.72
                           98.37
                           0
                           1581.0
     

     
     
121013
                           gb|AAG06318.1|AE004719_4
                           (AE004719) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           308
                           97.72
                           98.37
                           0
                           1581.0
     

     
     
121014
                           gb|AAN66323.1|AE016260_9
                           (AE016776) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           331
                           43.20
                           54.68
                           49
                           661.0
     

     
     
121016
                           gb|AAG03427.1|AE004443_5
                           (AE004443) transcriptional regulator TrpI [Pseudomonas aeruginosa PAO1]
                           311
                           41.47
                           51.76
                           19
                           504.0
     

     
     
4013
                           PA0037_tr
                           translation of PA0037
                           311
                           41.47
                           51.76
                           19
                           504.0
     

     






      

          
GC ORFID: 45371How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2930Glimmer Score: 

          
Start: 2670251Stop: 2671177

          
Length: 927


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2930 translation of PA2930Homolog Bit Score 613.0

          
Other Homologs:  t_PA0037 (ORF: BLASTX 195.0), t_PA2930 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATACTGACAATCATGGTGAGGAAAACTCACCATTCAGGCGCCGCCGCCTGCCCTCGCTGAACGCCCTG 
CGCTGCTTCGAGGCCGCCGCCCGCCTGGAGAACTTTTCCCGTGCCGCCGAGGCCCTGTGCCTGACCCACGGC 
GCCATCAGCCGCGCCGTGCGGACCCTGGAGGAGGAACTCGGTTGTGCGCTCTTCGAACGCCGCGGCCAGCGG 
GTTTTCCTCAGCGAGGCCGGCAGGCGCCTGCTCGCCGGCACCGGCCCGGCCCTCGACCTGATCGAGCGCACC 
GGCGAGGCCCTGCGCGCGGAGGCCGGACCCACCGCGGTGGTGCTGTCCTGCGAACCGACCTTGCTGATGCGC 
TGGCTGATCCCGCGGATCGCCGGATTCATGCAGGAACAGCCACGACTGTCGATCCAACTGGTCGCCGGCGGC 
GGGCCGTTCGCCTTCGGCCGCGGCATCGACCTGGCGATCCGCCGCAACGACTTCCCCTGGCCGCCCGGCAGC 
CATGCCCACTGGCTGTTCGACGAGCAGATCGGGCCGGTCTGCCGGGCGAGCGACGTCGAACGGCATTTCCAC 
CTCGATGCAGACCCGCCCGGGCTTCGCGCCGTCGCACCGCGCCTGCACACGGCGACCCGCCCGCAAGCCTGG 
AACACCTGGACCCGTCTCGCCGGACAGGCGCCGGCGACGACCGAAGGGCAGCGCTTCGAGCACTTCTACCTG 
AGCCTGCAGGCGGCCGGCGCCGGACTCGGCGTAGCCATCGGCCCCTGGCAACTGGTGCGCGACGATCTGTCC 
GCCGGCCTGCTGGCGGCGCCGCTGGGATTCCTCGCCGACGGCAGCAGCTATCACCTGCTGACCCCGCGACCG 
TTGCAGGCCGGAGAGCCTGCCACCCTGCTGCTGGAATGGCTGCGCCGCAGCGCGGCGGCCTGA