ViewGene
Locus Name:
GeneID:
Location:

GeneID:2367
TrivialName: PA14_03530
AnnotatorUID: ericdeziel
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03530
PAO1 Ortholog Locus:PA0272
Sequence Length:933
Protein Length:310
Start: 321983
Stop: 321051
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03661.1|AE004465_7 (AE004465) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 306/310 (98%), Positives = 307/310 (99%) to PA0272 of PAO1.
Sequence:
ATGCTGATCGCCAACGGCCTGCGCAAGGTCGACATGCAGGACCTGCTGGTCTTCCTCCAGGTCCACCAACGA
CAGAACCTCGTCGAGGTCGCCGAACAGCTGAACCTCAGTCCGTCGACGGTCAGCTACTGCCTGAAGAAGCTG
CGCCAGGCCTTCGACGACGAGCTGTTCATCGCCACCCGCGGCGGCATGCAGCCGACCCACAAGAGTCGCGCC
ATGCTGCCCCATGTGGAGGAAATGCTCGCCCGCATCAACGCCTGTCACGCCGCCCAGGGCAGCTTCGACCCG
CGTGGCGAGCCGCGTACCTTTACCCTCTGCGCGCCGGAATACGTCGAGCTGCTGATCCTTCCGGCACTCCTG
CGACGGCTCGCCGCCAACGGCCCGAGGATCGGCCTGGACATCCGCCGCCTGGGTCCCGAACTGCCCACCGAA
GCATTGCTCGACGGCCAGGTCGACCTGGTCTTCGACTTCGGTCCCGAGTACCACCGACCGGCACCGGAGCTA
CAGGCGCTCGCCCTGTTCAGCGACGAACTGCTCTGCGTGCAGGATCGTGCCCAGCCGCGCCACGAGCGCCTG
GAACTGGACGAGTTCTGCCGGCGCCGCTTCGTCTTCCCGACCCCGCTCGACGCCAGCAACGCCAACCTGGTG
GACACGTGGCTGCGACGCCAGGGCCGCAGCCGCGAAGTCGCCGCGCGCGCCAACAGCTACGTCGCCGCCCTG
CAACTGCTGTCGGGCAGCGACTTCGTGCTGATGCTGCCGCGACGTATCCACGCGCTGCTCGACGATGGCCGC
CATCGCGCCTGCCTCGCACCGTCAGGGCTGCCGCCGTTCGCCCTGCACCTGTCATGGAGCCGCGCCGCCGAC
CAGGACCCGGCGAACCTCTGGCTGCGCGAACAGGTGCTGATCGTCTGCGCCGAGCTGGGTTTGCTCTAG
Translation:
MLIANGLRKVDMQDLLVFLQVHQRQNLVEVAEQLNLSPSTVSYCLKKLRQAFDDELFIATRGGMQPTHKSRA
MLPHVEEMLARINACHAAQGSFDPRGEPRTFTLCAPEYVELLILPALLRRLAANGPRIGLDIRRLGPELPTE
ALLDGQVDLVFDFGPEYHRPAPELQALALFSDELLCVQDRAQPRHERLELDEFCRRRFVFPTPLDASNANLV
DTWLRRQGRSREVAARANSYVAALQLLSGSDFVLMLPRRIHALLDDGRHRACLAPSGLPPFALHLSWSRAAD
QDPANLWLREQVLIVCAELGLL*
AnnotationID:2375GeneID:2367
AnnotatorUID: ericdeziel
Modification Date/Time: 2003-11-16 19:07:15
Gene Name:PA0272
Confidence Code:3
GeneProduct:Probable transcriptional regulator
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4737




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21883




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2367
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4009
                           PA0272_tr
                           translation of PA0272
                           310
                           98.70
                           99.03
                           0
                           1584.0
     

     
     
120983
                           gb|AAG03661.1|AE004465_7
                           (AE004465) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           310
                           98.70
                           99.03
                           0
                           1584.0
     

     
     
120984
                           gb|AAO57022.1|
                           (AE016868) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           312
                           50.64
                           67.62
                           3
                           779.0
     

     






      

          
GC ORFID: 45369How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0272Glimmer Score: 

          
Start: 6123324Stop: 6122392

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0272 translation of PA0272Homolog Bit Score 614.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8022 (ORF: BLASTX 300.0), t_PA0272 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGATCGCCAACGGCCTGCGCAAGGTCGACATGCAGGACCTGCTGGTCTTCCTCCAGGTCCACCAACGA 
CAGAACCTCGTCGAGGTCGCCGAACAGCTGAACCTCAGTCCGTCGACGGTCAGCTACTGCCTGAAGAAGCTG 
CGCCAGGCCTTCGACGACGAGCTGTTCATCGCCACCCGCGGCGGCATGCAGCCGACCCACAAGAGTCGCGCC 
ATGCTGCCCCATGTGGAGGAAATGCTCGCCCGCATCAACGCCTGTCACGCCGCCCAGGGCAGCTTCGACCCG 
CGTGGCGAGCCGCGTACCTTTACCCTCTGCGCGCCGGAATACGTCGAGCTGCTGATCCTTCCGGCACTCCTG 
CGACGGCTCGCCGCCAACGGCCCGAGGATCGGCCTGGACATCCGCCGCCTGGGTCCCGAACTGCCCACCGAA 
GCATTGCTCGACGGCCAGGTCGACCTGGTCTTCGACTTCGGTCCCGAGTACCACCGACCGGCACCGGAGCTA 
CAGGCGCTCGCCCTGTTCAGCGACGAACTGCTCTGCGTGCAGGATCGTGCCCAGCCGCGCCACGAGCGCCTG 
GAACTGGACGAGTTCTGCCGGCGCCGCTTCGTCTTCCCGACCCCGCTCGACGCCAGCAACGCCAACCTGGTG 
GACACGTGGCTGCGACGCCAGGGCCGCAGCCGCGAAGTCGCCGCGCGCGCCAACAGCTACGTCGCCGCCCTG 
CAACTGCTGTCGGGCAGCGACTTCGTGCTGATGCTGCCGCGACGTATCCACGCGCTGCTCGACGATGGCCGC 
CATCGCGCCTGCCTCGCACCGTCAGGGCTGCCGCCGTTCGCCCTGCACCTGTCATGGAGCCGCGCCGCCGAC 
CAGGACCCGGCGAACCTCTGGCTGCGCGAACAGGTGCTGATCGTCTGCGCCGAGCTGGGTTTGCTCTAG