ViewGene
Locus Name:
GeneID:
Location:

GeneID:2364
TrivialName: PA14_31560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31560
PAO1 Ortholog Locus:PA2551
Sequence Length:933
Protein Length:310
Start: 2744233
Stop: 2743301
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05939.1|AE004683_3 (AE004683) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 309/310 (99%), Positives = 309/310 (99%)
Sequence:
ATGAACCTGAACAAAGTCGACCTGAACCTGTTCATCGTGTTCGATGCGATCTATACCGAAGCCAACCTGACC
CGCGCCGGGCAAATCGTCGGCATCACCCAGCCAGCCGTATCCAACGCCCTTTCCCGCCTGCGCGAGACCTTC
AACGACCCGCTGTTCGTGCGCACCGCCCAGGGCATGGTGCCGACCCCGATGGCGCAGAACATCATCGGCCCG
GTGCGCAACGCGCTGCAGTTGCTGCGGGTTTCGGTGCAGGAGAGCCGCAGCTTCGATCCGCAGCAGGCGAAC
AAGACCTACCGCATCAGCATGACCGACCTCACCGAAGCGGTCATCCTCCCCCCGCTGTTCCAGCGCTTGCGC
CGCCTGGCGCCGAACGTGCATATCGAGAGCTTCCTCGCCAAGCGCCGCGAAACCACCAAGGAACTCGCCGCC
GGCCGCCTCGACTTCGCCGTCGACGCGCCGCTGAACACCGATCCCCAGGTGCGCCACGTCAAGCTGATGGAG
GACCGCTACGTCTGCGCCATGCGCCGCGGCCACCCACTGGCGGGCAAGCCGAAGCTGGCCCTGGACGATTAC
CTGGGCCTGACCCACATCCATATTTCCAGCCGCCGCAGCGGCCTCGGCTACATCGACCTGGCGCTGGGCAAG
ATGGGCATCCAGCGCAAGATCGCGCTGCGCTCGCAGCACTACCTGATGGCCTCCACGGTGGTCCAGCAGACC
GACATGGCGATGACCGTGCCGGAACGCTTCGCCCGTCACCACGACCTGCACTACGCGGAGCTGCCGGTGAGC
GACGTGCCGAAACTGGAAACCCACCTGTACTGGCACGAAAGCACCGACCAGGACCCGGCCAACCGCTGGATG
CGCGAACAGATCATCGAGCTGTGCCAGCAGGTCACCGCGCGCGAGAACAAGGCGGCGCAGCCGGCGTGA
Translation:
MNLNKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALSRLRETFNDPLFVRTAQGMVPTPMAQNIIGP
VRNALQLLRVSVQESRSFDPQQANKTYRISMTDLTEAVILPPLFQRLRRLAPNVHIESFLAKRRETTKELAA
GRLDFAVDAPLNTDPQVRHVKLMEDRYVCAMRRGHPLAGKPKLALDDYLGLTHIHISSRRSGLGYIDLALGK
MGIQRKIALRSQHYLMASTVVQQTDMAMTVPERFARHHDLHYAELPVSDVPKLETHLYWHESTDQDPANRWM
REQIIELCQQVTARENKAAQPA*
AnnotationID:2372GeneID:2364
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 22:10:20
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2551
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68048.1|AE016437_5 (AE016783) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 308

 Score =  531 bits (1367), Expect = e-150
 Identities = 267/310 (86%), Positives = 286/310 (92%), Gaps = 2/310 (0%)

>gb|AAO56245.1| (AE016865) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 309

 Score =  525 bits (1351), Expect = e-148
 Identities = 263/304 (86%), Positives = 280/304 (92%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.7% aligned
Score =  123 bits (309), Expect = 3e-29
Identities = 72/300 (24%), Positives = 113/300 (37%), Gaps = 8/300 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  99.5% aligned
Score =  104 bits (260), Expect = 1e-23
Identities = 48/209 (22%), Positives = 72/209 (34%), Gaps = 5/209 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4731




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21877




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33125




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2364_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2364
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4006
                           PA2551_tr
                           translation of PA2551
                           310
                           99.67
                           99.67
                           0
                           1583.0
     

     
     
120886
                           gb|AAG05939.1|AE004683_3
                           (AE004683) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           310
                           99.67
                           99.67
                           0
                           1583.0
     

     
     
120887
                           gb|AAN68048.1|AE016437_5
                           (AE016783) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           310
                           86.12
                           92.25
                           2
                           1371.0
     

     
     
120888
                           gb|AAO56245.1|
                           (AE016865) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           310
                           84.83
                           90.32
                           1
                           1348.0
     

     
     
120889
                           emb|CAD15720.1|
                           (AL646067) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           322
                           42.54
                           59.93
                           13
                           674.0
     

     






      

          
GC ORFID: 45366How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2551Glimmer Score: 

          
Start: 2209693Stop: 2210625

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2551 translation of PA2551Homolog Bit Score 614.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8065 (ORF: BLASTX 530.0), t_PA2551 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGAACAAAGTCGACCTGAACCTGTTCATCGTGTTCGATGCGATCTATACCGAAGCCAACCTGACC 
CGCGCCGGGCAAATCGTCGGCATCACCCAGCCAGCCGTATCCAACGCCCTTTCCCGCCTGCGCGAGACCTTC 
AACGACCCGCTGTTCGTGCGCACCGCCCAGGGCATGGTGCCGACCCCGATGGCGCAGAACATCATCGGCCCG 
GTGCGCAACGCGCTGCAGTTGCTGCGGGTTTCGGTGCAGGAGAGCCGCAGCTTCGATCCGCAGCAGGCGAAC 
AAGACCTACCGCATCAGCATGACCGACCTCACCGAAGCGGTCATCCTCCCCCCGCTGTTCCAGCGCTTGCGC 
CGCCTGGCGCCGAACGTGCATATCGAGAGCTTCCTCGCCAAGCGCCGCGAAACCACCAAGGAACTCGCCGCC 
GGCCGCCTCGACTTCGCCGTCGACGCGCCGCTGAACACCGATCCCCAGGTGCGCCACGTCAAGCTGATGGAG 
GACCGCTACGTCTGCGCCATGCGCCGCGGCCACCCACTGGCGGGCAAGCCGAAGCTGGCCCTGGACGATTAC 
CTGGGCCTGACCCACATCCATATTTCCAGCCGCCGCAGCGGCCTCGGCTACATCGACCTGGCGCTGGGCAAG 
ATGGGCATCCAGCGCAAGATCGCGCTGCGCTCGCAGCACTACCTGATGGCCTCCACGGTGGTCCAGCAGACC 
GACATGGCGATGACCGTGCCGGAACGCTTCGCCCGTCACCACGACCTGCACTACGCGGAGCTGCCGGTGAGC 
GACGTGCCGAAACTGGAAACCCACCTGTACTGGCACGAAAGCACCGACCAGGACCCGGCCAACCGCTGGATG 
CGCGAACAGATCATCGAGCTGTGCCAGCAGGTCACCGCGCGCGAGAACAAGGCGGCGCAGCCGGCGTGA