ViewGene

Locus Name:
GeneID:
Location:

GeneID:2363
TrivialName: PA14_73120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73120
PAO1 Ortholog Locus:PA5545
Sequence Length:960
Protein Length:319
Start: 6512529
Stop: 6511570
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08930.1|AE004967_1 (AE004967) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 317/319 (99%), Positives = 318/319 (99%)
Sequence:
ATGTCGCTGAGCAGACGCTTCGGTCTTTTCACGCTTGCCGCAACGGTGACCTTCAGTACCGCGGTCTTCGCC
GCGCCGACCTTCATCAATATCCTCACCGGCGGCACCAGCGGGGTCTATTACCCCATAGGGGTCGGCCTCTCG
CAGATCTACGGGCACGATATCCAGGCCGCGAAAACCTCGGTGCAGGCCACCAAGGCCTCGGTCGAGAACCTC
AACCTGCTGCAGGCCGGGCGTGGAGAACTGGCGCTGGCGCTGGGCGACTCGGTCGCCGACGCCTGGAACGGG
GTCGCCGACGCCGGTTTCAAGGCGCCGTTGAAAAAGCTGCGGGCTATCGGCAATACCTATCCGAACTATATC
CAGGTAGTGGCCAGCCAAGCCTCGGGCATCAAGACCCTGGCCGACCTGAAAGGCAAACGCATTTCGGTGGGC
GCGCCCAAGAGCGGTACCGAGCTGAACGCTCGGGCGATCTTCAAGGCCGCCGGCCTGAGCTACGAGGACATG
GGCAAGGTGGAGTACCTGCCCTACGCCGAGTCGGTGGAGCTGATCAAGAACCGCCAGCTCGACGCTACGCTG
CAATCCTCCGGCTTGGGCATGGCGGCCATCCGCGACCTGGCCTCGACCATGCCGATCACCTTCGTCGCGATC
CCGGCGGACGTGGTGGCGAAGATCGACAGCCCGGCCTACCACGCCGCGAGCATTCCCGCCGGCACCTACGAC
GGCCAGGAGCAGGACGTGCCGACGGTGGCGATCGACAATATCCTGGTCAGCCACTCCGGGGTCAGCGACGAG
CTGGCCTACCAGATGACCAAGCTGATGTTCGACAACCTTCCGCGCCTGGTCACCGCCCATGCTGCCGCCAAG
GACATCGCCCTGGACAAGGCGGCGAAGAACCTGCCGATTCCGCTGCATCCCGGCGCCGAGCGCTTCTACAAG
GAGAAGGGCGTACTGCCCGAGTGA
Translation:
MSLSRRFGLFTLAATVTFSTAVFAAPTFINILTGGTSGVYYPIGVGLSQIYGHDIQAAKTSVQATKASVENL
NLLQAGRGELALALGDSVADAWNGVADAGFKAPLKKLRAIGNTYPNYIQVVASQASGIKTLADLKGKRISVG
APKSGTELNARAIFKAAGLSYEDMGKVEYLPYAESVELIKNRQLDATLQSSGLGMAAIRDLASTMPITFVAI
PADVVAKIDSPAYHAASIPAGTYDGQEQDVPTVAIDNILVSHSGVSDELAYQMTKLMFDNLPRLVTAHAAAK
DIALDKAAKNLPIPLHPGAERFYKEKGVLPE*
AnnotationID:2371GeneID:2363
AnnotatorUID: diggins
Modification Date/Time: 2004-07-22 13:01:19
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic transport protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2358
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69548.1|AE016588_5 (AE016788) periplasmic binding protein, putative [Pseudomonas
           putida KT2440]
          Length = 316

 Score =  470 bits (1210), Expect = e-132
 Identities = 238/308 (77%), Positives = 270/308 (87%), Gaps = 1/308 (0%)

>gb|AAN53538.1|AE015494_6 (AE015494) immunogenic-related protein [Shewanella oneidensis MR-1]
          Length = 318

 Score =  460 bits (1184), Expect = e-129
 Identities = 239/318 (75%), Positives = 268/318 (84%), Gaps = 1/318 (0%)

>dbj|BAC46566.1| (AP005939) immunogenic protein precursor [Bradyrhizobium japonicum
           USDA 110]
          Length = 372

 Score =  382 bits (980), Expect = e-105
 Identities = 194/311 (62%), Positives = 245/311 (78%), Gaps = 3/311 (0%)
Structural Features:
COG2358, Imp, TRAP-type uncharacterized transport system, periplasmic component
Genomic Context:
Comment:
ReferenceID:4729
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21875
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33332
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2363_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2363

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4005 PA5545_tr translation of PA5545 319 99.37 99.68 0 1585.0
120878 gb|AAG08930.1|AE004967_1 (AE004967) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 319 99.37 99.68 0 1585.0
120879 gb|AAN69548.1|AE016588_5 (AE016788) periplasmic binding protein, putative [Pseudomonas putida KT2440] 320 75.00 85.62 5 1208.0
120880 gb|AAN53538.1|AE015494_6 (AE015494) immunogenic-related protein [Shewanella oneidensis MR-1] 320 74.68 83.75 3 1186.0
120881 emb|CAE29950.1| (BX572607) conserved unknown protein [Rhodopseudomonas palustris CGA009] 319 61.44 78.05 4 1000.0
GC ORFID: 45365How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5545Glimmer Score:
Start: 5776218Stop: 5775259
Length: 960
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5545 translation of PA5545Homolog Bit Score 615.0
Other Homologs: t_PA5545 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGCTGAGCAGACGCTTCGGTCTTTTCACGCTTGCCGCAACGGTGACCTTCAGTACCGCGGTCTTCGCC
GCGCCGACCTTCATCAATATCCTCACCGGCGGCACCAGCGGGGTCTATTACCCCATAGGGGTCGGCCTCTCG
CAGATCTACGGGCACGATATCCAGGCCGCGAAAACCTCGGTGCAGGCCACCAAGGCCTCGGTCGAGAACCTC
AACCTGCTGCAGGCCGGGCGTGGAGAACTGGCGCTGGCGCTGGGCGACTCGGTCGCCGACGCCTGGAACGGG
GTCGCCGACGCCGGTTTCAAGGCGCCGTTGAAAAAGCTGCGGGCTATCGGCAATACCTATCCGAACTATATC
CAGGTAGTGGCCAGCCAAGCCTCGGGCATCAAGACCCTGGCCGACCTGAAAGGCAAACGCATTTCGGTGGGC
GCGCCCAAGAGCGGTACCGAGCTGAACGCTCGGGCGATCTTCAAGGCCGCCGGCCTGAGCTACGAGGACATG
GGCAAGGTGGAGTACCTGCCCTACGCCGAGTCGGTGGAGCTGATCAAGAACCGCCAGCTCGACGCTACGCTG
CAATCCTCCGGCTTGGGCATGGCGGCCATCCGCGACCTGGCCTCGACCATGCCGATCACCTTCGTCGCGATC
CCGGCGGACGTGGTGGCGAAGATCGACAGCCCGGCCTACCACGCCGCGAGCATTCCCGCCGGCACCTACGAC
GGCCAGGAGCAGGACGTGCCGACGGTGGCGATCGACAATATCCTGGTCAGCCACTCCGGGGTCAGCGACGAG
CTGGCCTACCAGATGACCAAGCTGATGTTCGACAACCTTCCGCGCCTGGTCACCGCCCATGCTGCCGCCAAG
GACATCGCCCTGGACAAGGCGGCGAAGAACCTGCCGATTCCGCTGCATCCCGGCGCCGAGCGCTTCTACAAG
GAGAAGGGCGTACTGCCCGAGTGA