ViewGene
Locus Name:
GeneID:
Location:

GeneID:2362
TrivialName: PA14_54130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54130
PAO1 Ortholog Locus:PA0784
Sequence Length:930
Protein Length:309
Start: 4800078
Stop: 4801007
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04173.1|AE004513_5 (AE004513) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 303/309 (98%), Positives = 306/309 (99%)
Sequence:
ATGGAGATTCCAATGTTCGCTTCCCTGCCGCTGACCGCGTTGCGCACCTTCGAATCGGCGGCCCGCCAGTCG
AGCTTCAAGGCCGCCGCCGAGGAGCTTGCGGTAACGCCAACCGCGGTTTCCCACCAGATCCGTTCGCTGGAA
GCCTGGCTCGGCGTTCCGCTGTTCCAGCGCCTGCCACGGAAAGTGCGCCTGACCGACTGCGGCGAACGGCTG
TTCCGCAGCCTGCACGGGGCCCTACTGGAAATTTCGCAGAGCGTCGACACCCTGCGTCCGCAGCGCAGCGTC
GGCAACCTGACGGTCTCCACCACCCCGGCCTTCGCCGCCCTCTGGCTGGTGCCGCGTCTCGGCCGCTTCTAC
ACCGCACACCCACAGATCAACCTGCGCCTGGACACCAACTGCGAAGTCCTCGACCTGCACCAGGACGCCAGC
ATCGACCTGGTGATCCGCTACAGCCTCGACGACTACCCGAACTTCTACGGTCTCTGCCTGTTCGACGAATGC
TTCGCGGTCTACGGCTCGCCGGCCCAGGTCGCCCTGGCCGGAGAACGGCAGCCGACCCTGATCAGCGTGCGC
TGGCACAACTCCAGGCTCTACGCCCACGGCTGGGAGGCCTGGTGCGCTCAGGCCGGCGAAAACTGGATGGAG
GGCCAGCCGGTGATCCGCCAGTACGACGAGGAGCACTATGCCCTGCAGGCGGCCATCGCCGGCCAGGGACTG
GTGCTGGCCAGTTCGATCCTGGTTTCGGAAAGCGTCGCCAGCGGCCTGCTGCAACCCTACAGAGCGGATATC
AGTGTCGACGGCGCCGGCTACAGCGCGCTATGCGTGCCCGGACGGGAACGTCATCCGCCGGTGAAGGCATTC
TTCGAATGGCTGAGGCTGGAGGCACGACAGTCGGGGCACGCTTGCCGGCTGGAGCGGGACGCCTGA
Translation:
MEIPMFASLPLTALRTFESAARQSSFKAAAEELAVTPTAVSHQIRSLEAWLGVPLFQRLPRKVRLTDCGERL
FRSLHGALLEISQSVDTLRPQRSVGNLTVSTTPAFAALWLVPRLGRFYTAHPQINLRLDTNCEVLDLHQDAS
IDLVIRYSLDDYPNFYGLCLFDECFAVYGSPAQVALAGERQPTLISVRWHNSRLYAHGWEAWCAQAGENWME
GQPVIRQYDEEHYALQAAIAGQGLVLASSILVSESVASGLLQPYRADISVDGAGYSALCVPGRERHPPVKAF
FEWLRLEARQSGHACRLERDA*
AnnotationID:2370GeneID:2362
AnnotatorUID: danlee
Modification Date/Time: 2004-04-15 15:03:00
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:(1) Cytoplasmic
Synonyms:PA0784
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription].
     CD-Length = 297 residues, 100.0% aligned
     Score =  141 bits (356), Expect = 2e-34






   
Genomic Context:






   
Comment:


















    ReferenceID:4727




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21873




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2362
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4004
                           PA0784_tr
                           translation of PA0784
                           309
                           98.05
                           99.02
                           0
                           1585.0
     

     
     
120876
                           gb|AAG04173.1|AE004513_5
                           (AE004513) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           309
                           98.05
                           99.02
                           0
                           1585.0
     

     
     
120877
                           emb|CAE32885.1|
                           (BX640444) putative LysR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           322
                           54.34
                           65.52
                           27
                           836.0
     

     






      

          
GC ORFID: 45364How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0784Glimmer Score: 

          
Start: 153829Stop: 152900

          
Length: 930


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0784 translation of PA0784Homolog Bit Score 615.0

          
Other Homologs:  t_PA0784 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGATTCCAATGTTCGCTTCCCTGCCGCTGACCGCGTTGCGCACCTTCGAATCGGCGGCCCGCCAGTCG 
AGCTTCAAGGCCGCCGCCGAGGAGCTTGCGGTAACGCCAACCGCGGTTTCCCACCAGATCCGTTCGCTGGAA 
GCCTGGCTCGGCGTTCCGCTGTTCCAGCGCCTGCCACGGAAAGTGCGCCTGACCGACTGCGGCGAACGGCTG 
TTCCGCAGCCTGCACGGGGCCCTACTGGAAATTTCGCAGAGCGTCGACACCCTGCGTCCGCAGCGCAGCGTC 
GGCAACCTGACGGTCTCCACCACCCCGGCCTTCGCCGCCCTCTGGCTGGTGCCGCGTCTCGGCCGCTTCTAC 
ACCGCACACCCACAGATCAACCTGCGCCTGGACACCAACTGCGAAGTCCTCGACCTGCACCAGGACGCCAGC 
ATCGACCTGGTGATCCGCTACAGCCTCGACGACTACCCGAACTTCTACGGTCTCTGCCTGTTCGACGAATGC 
TTCGCGGTCTACGGCTCGCCGGCCCAGGTCGCCCTGGCCGGAGAACGGCAGCCGACCCTGATCAGCGTGCGC 
TGGCACAACTCCAGGCTCTACGCCCACGGCTGGGAGGCCTGGTGCGCTCAGGCCGGCGAAAACTGGATGGAG 
GGCCAGCCGGTGATCCGCCAGTACGACGAGGAGCACTATGCCCTGCAGGCGGCCATCGCCGGCCAGGGACTG 
GTGCTGGCCAGTTCGATCCTGGTTTCGGAAAGCGTCGCCAGCGGCCTGCTGCAACCCTACAGAGCGGATATC 
AGTGTCGACGGCGCCGGCTACAGCGCGCTATGCGTGCCCGGACGGGAACGTCATCCGCCGGTGAAGGCATTC 
TTCGAATGGCTGAGGCTGGAGGCACGACAGTCGGGGCACGCTTGCCGGCTGGAGCGGGACGCCTGA