ViewGene
Locus Name:
GeneID:
Location:

GeneID:2361
TrivialName: PA14_02290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02290
PAO1 Ortholog Locus:PA0181
Sequence Length:936
Protein Length:311
Start: 205815
Stop: 204880
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03571.1|AE004456_2 (AE004456) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 309/311 (99%), Positives = 309/311 (99%), Gaps = 1/311 (0%)
Sequence:
ATGGAAACCCTCAGCAATATCCAGTGCTTCGTCCGCAGCGCCGAGGCCGGCAGCTTCGCCGAGGCCGCCAGG
CGCCTGGGCCTGACGCCGGCCGGGGTGGGCAAGAACGTCGCCCGCCTGGAAAGCAACCTCGGCGTGCGCCTG
TTCCAGCGCAGCACCCGGCGCCTGACCCTGACCGAAGCCGGGGAGCGTTTCCTGCAAGAGGTCGGCGGCAGC
CTGGAGGGCATCCAGACCGCTCTCGCCAACGTCTCCAGCGTCGGCAACCAACCCAGCGGCACGTTGAAGGTC
AGCATGGGGCTGGCCTTCGGCCGCGACTACATCCTGCCGCTGCTCGGCGAGTTCCTCGAACGCTATCCCGAC
ATCGTGCCCGACTGGCATTTCGACAATCGCCAGGTCGACCTCATCGGCGAAGGCTTCGACGCCGCCATCGGC
GGCGGTTTCGAACTGCCTCCTCCCGGGGTGGTGGCGCGCAACCTGACGCCGGGCCACCTGATCCTCCTCGCC
TCGCCCGCCTACCTCCGCGACAAGCCGCCGATCCGCCATCCAGGCGACCTGGGCGGCTTCGACGGGATCCGC
ATCCGCTCGCCGCAGACCGGCCGCGTGCGCTCCTGGCCGCTGCGCCGGCGCAACGGCGAGGAGGCGCCGATC
GAGCTGCGCGAACGCATGACCATGAGCGACCCGGAAGCCACCTGCGAGGTCGCCGCCATGGGCCTGGGCATC
ACCCTGGTATGCATGCAGCACGCCTATGCCTACCTGGAGTCCGGCGCCCTGGTGCGGGTCCTGCCGGACTGG
TACGTCGACGCCGGCAACACCAGCCTCTACTACGCGGCGAACAAGCTGCTACCGGCCAAGACCCGGGTCTTC
GTCGACTTCGTCGTCGACTACTTCCGCCGCCAGGACCTGGCCCGGCGCTTCTCCGCCTTCCCAACCGGCTAG
Translation:
METLSNIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAGERFLQEVGGS
LEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIVPDWHFDNRQVDLIGEGFDAAIG
GGFELPPPGVVARNLTPGHLILLASPAYLRDKPPIRHPGDLGGFDGIRIRSPQTGRVRSWPLRRRNGEEAPI
ELRERMTMSDPEATCEVAAMGLGITLVCMQHAYAYLESGALVRVLPDWYVDAGNTSLYYAANKLLPAKTRVF
VDFVVDYFRRQDLARRFSAFPTG*
AnnotationID:2369GeneID:2361
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 09:09:00
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA0181
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67472.1|AE016374_4 (AE016780) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 312

 Score =  400 bits (1029), Expect = e-111
 Identities = 203/307 (66%), Positives = 238/307 (77%), Gaps = 1/307 (0%)

>gb|AAL45873.1| (AE008941) transcriptional regulator, LysR family [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 309

 Score =  322 bits (824), Expect = 2e-87
 Identities = 163/306 (53%), Positives = 206/306 (67%), Gaps = 1/306 (0%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  98.3% aligned
Score =  151 bits (381), Expect = 1e-37
Identities = 99/301 (32%), Positives = 139/301 (46%), Gaps = 14/301 (4%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score = 96.2 bits (239), Expect = 5e-21
Identities = 60/215 (27%), Positives = 85/215 (39%), Gaps = 10/215 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4725




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21871




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33551




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2361_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2361
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4003
                           PA0181_tr
                           translation of PA0181
                           311
                           99.35
                           99.35
                           1
                           1590.0
     

     
     
120871
                           gb|AAG03571.1|AE004456_2
                           (AE004456) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           311
                           99.35
                           99.35
                           1
                           1590.0
     

     
     
120872
                           gb|AAN67472.1|AE016374_4
                           (AE016780) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           313
                           64.85
                           76.03
                           3
                           1026.0
     

     
     
120873
                           gb|AAP49331.1|
                           (AY212801) Uvs050 [uncultured bacterium]
                           311
                           57.87
                           72.66
                           4
                           929.0
     

     
     
120874
                           gb|AAL45873.1|
                           (AE008941) transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           314
                           52.22
                           65.92
                           8
                           820.0
     

     






      

          
GC ORFID: 45363How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0181Glimmer Score: 

          
Start: 6007154Stop: 6006219

          
Length: 936


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0181 translation of PA0181Homolog Bit Score 616.0

          
Other Homologs:  t_PA0181 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAACCCTCAGCAATATCCAGTGCTTCGTCCGCAGCGCCGAGGCCGGCAGCTTCGCCGAGGCCGCCAGG 
CGCCTGGGCCTGACGCCGGCCGGGGTGGGCAAGAACGTCGCCCGCCTGGAAAGCAACCTCGGCGTGCGCCTG 
TTCCAGCGCAGCACCCGGCGCCTGACCCTGACCGAAGCCGGGGAGCGTTTCCTGCAAGAGGTCGGCGGCAGC 
CTGGAGGGCATCCAGACCGCTCTCGCCAACGTCTCCAGCGTCGGCAACCAACCCAGCGGCACGTTGAAGGTC 
AGCATGGGGCTGGCCTTCGGCCGCGACTACATCCTGCCGCTGCTCGGCGAGTTCCTCGAACGCTATCCCGAC 
ATCGTGCCCGACTGGCATTTCGACAATCGCCAGGTCGACCTCATCGGCGAAGGCTTCGACGCCGCCATCGGC 
GGCGGTTTCGAACTGCCTCCTCCCGGGGTGGTGGCGCGCAACCTGACGCCGGGCCACCTGATCCTCCTCGCC 
TCGCCCGCCTACCTCCGCGACAAGCCGCCGATCCGCCATCCAGGCGACCTGGGCGGCTTCGACGGGATCCGC 
ATCCGCTCGCCGCAGACCGGCCGCGTGCGCTCCTGGCCGCTGCGCCGGCGCAACGGCGAGGAGGCGCCGATC 
GAGCTGCGCGAACGCATGACCATGAGCGACCCGGAAGCCACCTGCGAGGTCGCCGCCATGGGCCTGGGCATC 
ACCCTGGTATGCATGCAGCACGCCTATGCCTACCTGGAGTCCGGCGCCCTGGTGCGGGTCCTGCCGGACTGG 
TACGTCGACGCCGGCAACACCAGCCTCTACTACGCGGCGAACAAGCTGCTACCGGCCAAGACCCGGGTCTTC 
GTCGACTTCGTCGTCGACTACTTCCGCCGCCAGGACCTGGCCCGGCGCTTCTCCGCCTTCCCAACCGGCTAG