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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG03571.1|AE004456_2 (AE004456) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 309/311 (99%), Positives = 309/311 (99%), Gaps = 1/311 (0%)
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Sequence:
ATGGAAACCCTCAGCAATATCCAGTGCTTCGTCCGCAGCGCCGAGGCCGGCAGCTTCGCCGAGGCCGCCAGG
CGCCTGGGCCTGACGCCGGCCGGGGTGGGCAAGAACGTCGCCCGCCTGGAAAGCAACCTCGGCGTGCGCCTG
TTCCAGCGCAGCACCCGGCGCCTGACCCTGACCGAAGCCGGGGAGCGTTTCCTGCAAGAGGTCGGCGGCAGC
CTGGAGGGCATCCAGACCGCTCTCGCCAACGTCTCCAGCGTCGGCAACCAACCCAGCGGCACGTTGAAGGTC
AGCATGGGGCTGGCCTTCGGCCGCGACTACATCCTGCCGCTGCTCGGCGAGTTCCTCGAACGCTATCCCGAC
ATCGTGCCCGACTGGCATTTCGACAATCGCCAGGTCGACCTCATCGGCGAAGGCTTCGACGCCGCCATCGGC
GGCGGTTTCGAACTGCCTCCTCCCGGGGTGGTGGCGCGCAACCTGACGCCGGGCCACCTGATCCTCCTCGCC
TCGCCCGCCTACCTCCGCGACAAGCCGCCGATCCGCCATCCAGGCGACCTGGGCGGCTTCGACGGGATCCGC
ATCCGCTCGCCGCAGACCGGCCGCGTGCGCTCCTGGCCGCTGCGCCGGCGCAACGGCGAGGAGGCGCCGATC
GAGCTGCGCGAACGCATGACCATGAGCGACCCGGAAGCCACCTGCGAGGTCGCCGCCATGGGCCTGGGCATC
ACCCTGGTATGCATGCAGCACGCCTATGCCTACCTGGAGTCCGGCGCCCTGGTGCGGGTCCTGCCGGACTGG
TACGTCGACGCCGGCAACACCAGCCTCTACTACGCGGCGAACAAGCTGCTACCGGCCAAGACCCGGGTCTTC
GTCGACTTCGTCGTCGACTACTTCCGCCGCCAGGACCTGGCCCGGCGCTTCTCCGCCTTCCCAACCGGCTAG
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Translation:
METLSNIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNLGVRLFQRSTRRLTLTEAGERFLQEVGGS
LEGIQTALANVSSVGNQPSGTLKVSMGLAFGRDYILPLLGEFLERYPDIVPDWHFDNRQVDLIGEGFDAAIG
GGFELPPPGVVARNLTPGHLILLASPAYLRDKPPIRHPGDLGGFDGIRIRSPQTGRVRSWPLRRRNGEEAPI
ELRERMTMSDPEATCEVAAMGLGITLVCMQHAYAYLESGALVRVLPDWYVDAGNTSLYYAANKLLPAKTRVF
VDFVVDYFRRQDLARRFSAFPTG* |
AnnotationID:2369 | GeneID:2361 |
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Modification Date/Time: |
2005-03-23 09:09:00 |
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GeneProduct: | putative transcriptional regulator, LysR family |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (25) Transcriptional regulators |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN67472.1|AE016374_4 (AE016780) transcriptional regulator, LysR family [Pseudomonas
putida KT2440]
Length = 312
Score = 400 bits (1029), Expect = e-111
Identities = 203/307 (66%), Positives = 238/307 (77%), Gaps = 1/307 (0%)
>gb|AAL45873.1| (AE008941) transcriptional regulator, LysR family [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 309
Score = 322 bits (824), Expect = 2e-87
Identities = 163/306 (53%), Positives = 206/306 (67%), Gaps = 1/306 (0%) |
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Structural Features: | COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 98.3% aligned
Score = 151 bits (381), Expect = 1e-37
Identities = 99/301 (32%), Positives = 139/301 (46%), Gaps = 14/301 (4%)
pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score = 96.2 bits (239), Expect = 5e-21
Identities = 60/215 (27%), Positives = 85/215 (39%), Gaps = 10/215 (4%) |
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