ViewGene

Locus Name:
GeneID:
Location:

GeneID:2360
TrivialName: PA14_67170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67170
PAO1 Ortholog Locus:PA5085
Sequence Length:957
Protein Length:318
Start: 5994966
Stop: 5995922
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08470.1|AE004921_7 (AE004921) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 318/318 (100%), Positives = 318/318 (100%)
Sequence:
ATGAATAAAGATGGCCAGGGTATAAATCCAGGTTATGGGCTCGCGCCGATGAAGCTCCGCCATATCGAAGTG
TTCCAGGCGATCCGCCAGGCTGGCTCGGTCAGCGGCGCCGCACAGTTGCTGCACGTGTCCCAACCGGCGGTG
AGCAAGGTCTTGCAGCACGCCGAGCAGCAGCTGGGCTTCCCGCTGTTCTTGCGAGTGCGCGGCAAGCTGCTG
GCGACTCCGGAAGCGCTGGAACTGGAGCGCGAAGTGGCCAAGCTCAGCGATAGCCTGCAGGCCGTGCGGCGC
CTGGCGCAGAACCTGCGGCGCCAGCCGGGCCACAGCCTGCGCATCGGCGCCACCCCGGCCCTGGCGCTGTCG
CTGCTGCCACGGGCGATCGGCGAATGGAGCGCGCGCTATCCGCAGAGCGGCTGCGAACTGGCCACCTTGCAT
TCGCGCGAGCTGGTGCAGGGCCTGCTGATGCGCGAACTGGACCTGGCCCTGAGCCTGAAGCAGCCGGAACAC
CCCGGCCTGCGCGGCGAAGCCATCGCCAGCGGCGTATTGGTGGCCCTGGCGCCGCGCGAACACTGGCCCGAA
GCGGAACGCCGGCAGCCGCTGAGCCTGGCCGGGCTGGCCGGCGAAGCGCTGATCGGGCTGTCCACCGCCGAC
CCGCTGTTCGCCCGCCTGGAGGATTACCTCAGCGCCGTGGAGCCACCGCCGCAGGTGAAGATCGCCGTGCAG
ACCTACGCCCTCGCCCGCGCCCTGGTGGAGGCTGGGGCCGGCCTGGCGCTGGTCGATCCCTTCACCGCCCTC
GGCGCCGACCCGCACAGCACCGCAATCCGCCCATTGAGCCCGGCCTTCCCGGTCACCCTCTACGCCATCACC
CGCGCCGACGAAACCCCGCCGCACACCCTCGCTCCGCTGCTGCGGATGCTCGCCCGCCAGGCCGAGGAGCGT
TTGCGGGCCGTGCAGATGTAG
Translation:
MNKDGQGINPGYGLAPMKLRHIEVFQAIRQAGSVSGAAQLLHVSQPAVSKVLQHAEQQLGFPLFLRVRGKLL
ATPEALELEREVAKLSDSLQAVRRLAQNLRRQPGHSLRIGATPALALSLLPRAIGEWSARYPQSGCELATLH
SRELVQGLLMRELDLALSLKQPEHPGLRGEAIASGVLVALAPREHWPEAERRQPLSLAGLAGEALIGLSTAD
PLFARLEDYLSAVEPPPQVKIAVQTYALARALVEAGAGLALVDPFTALGADPHSTAIRPLSPAFPVTLYAIT
RADETPPHTLAPLLRMLARQAEERLRAVQM*
AnnotationID:2368GeneID:2360
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 06:06:06
Gene Name:
Confidence Code:3
GeneProduct:putative LysR-family transcriptional regulator
Cell Localization:()
Synonyms:PA5085
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score =  102 bits (255), Expect = 5e-23
Identities = 87/302 (28%), Positives = 125/302 (41%), Gaps = 8/302 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 100.0% aligned
Score = 93.9 bits (233), Expect = 2e-20
Identities = 64/211 (30%), Positives = 86/211 (40%), Gaps = 4/211 (1%)
Genomic Context:
Comment:
ReferenceID:4723
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21869
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34936
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2360_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2360

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4002 PA5085_tr translation of PA5085 318 99.99 99.99 0 1588.0
120867 gb|AAG08470.1|AE004921_7 (AE004921) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 318 99.99 99.99 0 1588.0
120868 emb|CAE34414.1| (BX640449) LysR family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 331 40.78 52.87 45 511.0
120870 emb|CAE38900.1| (BX640434) LysR family transcriptional regulator [Bordetella parapertussis] 331 40.48 52.56 46 498.0
120869 emb|CAE40631.1| (BX640411) LysR family transcriptional regulator [Bordetella pertussis] [Bordetella pertussis Tohama I] 335 40.00 51.34 53 504.0
GC ORFID: 45362How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5085Glimmer Score:
Start: 5258651Stop: 5259607
Length: 957
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5085 translation of PA5085Homolog Bit Score 616.0
Other Homologs: t_PA5085 (ORF: GLIMMER)
GC ORF Sequence
ATGAATAAAGATGGCCAGGGTATAAATCCAGGTTATGGGCTCGCGCCGATGAAGCTCCGCCATATCGAAGTG
TTCCAGGCGATCCGCCAGGCTGGCTCGGTCAGCGGCGCCGCACAGTTGCTGCACGTGTCCCAACCGGCGGTG
AGCAAGGTCTTGCAGCACGCCGAGCAGCAGCTGGGCTTCCCGCTGTTCTTGCGAGTGCGCGGCAAGCTGCTG
GCGACTCCGGAAGCGCTGGAACTGGAGCGCGAAGTGGCCAAGCTCAGCGATAGCCTGCAGGCCGTGCGGCGC
CTGGCGCAGAACCTGCGGCGCCAGCCGGGCCACAGCCTGCGCATCGGCGCCACCCCGGCCCTGGCGCTGTCG
CTGCTGCCACGGGCGATCGGCGAATGGAGCGCGCGCTATCCGCAGAGCGGCTGCGAACTGGCCACCTTGCAT
TCGCGCGAGCTGGTGCAGGGCCTGCTGATGCGCGAACTGGACCTGGCCCTGAGCCTGAAGCAGCCGGAACAC
CCCGGCCTGCGCGGCGAAGCCATCGCCAGCGGCGTATTGGTGGCCCTGGCGCCGCGCGAACACTGGCCCGAA
GCGGAACGCCGGCAGCCGCTGAGCCTGGCCGGGCTGGCCGGCGAAGCGCTGATCGGGCTGTCCACCGCCGAC
CCGCTGTTCGCCCGCCTGGAGGATTACCTCAGCGCCGTGGAGCCACCGCCGCAGGTGAAGATCGCCGTGCAG
ACCTACGCCCTCGCCCGCGCCCTGGTGGAGGCTGGGGCCGGCCTGGCGCTGGTCGATCCCTTCACCGCCCTC
GGCGCCGACCCGCACAGCACCGCAATCCGCCCATTGAGCCCGGCCTTCCCGGTCACCCTCTACGCCATCACC
CGCGCCGACGAAACCCCGCCGCACACCCTCGCTCCGCTGCTGCGGATGCTCGCCCGCCAGGCCGAGGAGCGT
TTGCGGGCCGTGCAGATGTAG