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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG07348.1|AE004814_3 (AE004814) probable ATP-dependent helicase [Pseudomonas aeruginosa PAO1]
Identities = 757/764 (99%), Positives = 759/764 (99%)
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Sequence:
TTGTTCCCGCCCTGCGCCAGGCCCTTGGTGCACAACACCAGGCCGTCCTGGAAGCCCCGCCGGGTGCCGGCA
AGACCACCCGGGTGCCGCTGGCCCTGCTCGACGAGCCCTGGCTCGCCGGCCaaCGCATCCTCATGCTCGAAC
CGCGACGCCTGGCGGCGCGgGCcGcGgccgagcggCTGGCCGCCGAGCTGGgcgaaaagggtcggcgAgacc
gtcggctacgggaTccgcctggaaaGCAGGGTCGGCCCGAAGACCCGCATCGAAGTGGTCACCGAGGGTATC
CTTGCCCGTCGCCTGCAAGACGACCCGGCGCTGGACGGTGTCGGCCTGGTGATCTTCGACGAATTCCAGGAG
CGCAGCCTGGATGCCGACCTGGCCCTGGCGCTGACTCTCAATGGCCGCGAACTGTTGCGCGACGAGCCGCCG
CTGAAAGTGCTGGTGATGTCGGCGACCCTGGAGGGCGAGCGTCTTGCGGCGCTGCTCGGCGAAGCGCCGGTG
GTGCGCAGCGAGGGCCGCATGTTCCCGGTGGATATCCGCTGGGGACGGGCGGCGCAACCCGGCGAGTTCATC
GAGCCGCGGGTGCAGCAGGCGGTGCTCCAGGCGCTGGCGGAGGAAAGCGGCAGCGTGCTGGTCTTTCTTCCC
GGCCAGGCCGAGATCCGCCGCGTTCACGAAGGCTTGCGCGAAGCCCTTGGCGGACGCCCCGAGGTGCTGCTC
TGCCCGCTGCATGGCGAGCTCGACCTCGCCGCCCAGCGCGCCGCCATCGAGCCGGCGTCGCGGGGCACGCGC
AAGGTGGTGCTGGCGACCAACATCGCCGAGACCAGCCTGACCATCGACGGCGTACGGGTGGTGATCGACGCC
GGCCTGGCGCGGGTGCCGCGCTTCGATCCGGGTAGCGGCATGACCCGCCTGGAGACCCAGCGCATCTCcCGC
GCCTCCGCTACCCAGCGTGCCGGCCGCGCAGGGCGCCTGGAGCCGGGCGTATGCTACCGCTTGTGGTCGGAG
AGCCAGCATGAGCAGTTGCCTGCCTACGGCACGGCGGAAATCCTCCAGGCCGATCTGGCCGGGCTGGCCCTG
CAACTGGCGCGCTGGGGCGTGGCGCCGGAGGAGCTGGCCTGGCTCGACGCGCCGCCCGCGGCGGCCTACGCC
CAGGCCCGCGAGCTGCTCGGGCGGCTGGGGGCGCTGAACGCCAGCGGTGCGTTGAGTGCCCATGGCCAGGCG
ATGGCCGCATTGCCGACCCATCCGCGCATTGCCCACCTGCTGCTGCGCGGCCAGGCCCTCGGCCTTGGCGAA
CTGGCTTGCGACGTAGCGGCGCTGCTCGGCGAACGTGACATACAGCGTGGCGGCGGCGCCGACCTGCACAGC
CGTCTCGCCCTGCTCGCCGGCGAGGCCCGCGCTGGCGCCTCGCGCGGCGCGGTACAGCGCGCCCGGCAACTG
GCCCGGCAGTTCCGCGGTTACCTGCGCGGCGCCGCCAGCGAAGCGGTCGTCGATCCCGGCCATCCTCGTTGG
CTGGGCTGTCTGCTGGCCTTCGCCTATCCCGACCGCATCGCTCGCCAGCGCCGCGCCGGCGGCGGCGACTAC
CGGCTGGCCAATGGGCGCGCTGCGCAGTTCGGCGAACCGGACAGCCTGATGAAGCAGCCCTGGCTGGTGATC
GCCGATCTGGGCAGCCGCCAGGGCCAGCGCGAAGAGCGGATCTACCTGGCCGCCGAACTCGATCCGAGGTTG
TTCGATACGGTCCTGGCGGAGCAGGTCAGCCAGCGCGACGAGCTGCAGTGGGACGAGCGCGAAGGCGTGCTG
CGCGCCGAGCGCCAGCGCCGGGTCGGCGAACTGGTGCTGTCCAGCGAGGCGCTACCCGGCCTCGACGAAGCG
GCGCGCAGCCAGGCGCTGCTCGGCCTGGTCCGGCGCAAGGGCCTGGAGTTGTTGCCCTGGACCCCGGAACTG
CGCCAGTGGCAGGCGCGCATCGGCTTGCTGCGCCGGCTGGACCTGGAAGACAAGGGCGAGAGCGAGTGGCCG
GACGTCAGCGACGCCGCGTTGCTGGAACGGTTGGAGGAATGGTTGCCGGCCTATCTCGGCAAGGTCACCCGC
CTGGCTCACTTCGCCAACCTCGACCTGGCTTCGATCCTCGCCGGGCTGCTGCCCTGGCCATTACCGCAGCGT
CTCGACGAGTGGGCACCGAAAACCCTGGAAGTCCCCTCCGGCTCGCGCATCCGCCTGGACTACAGCGAAACC
CCGCCGATCCTCGCGGTGCGCCTGCAGGAACTGTTCGGCCTCGGCGACACTCCGCGCATCGCCCAGGGCCGC
CTGGCAGTGAAGCTGCACCTGCTGTCTCCCGCGCATCGTCCGGTGCAGGTGACCCAGGACCTGGCGAACTTC
TGGCGCAGCACCTATGCGGAAGTCAGGAAGGACCTGAAGGGACGCTATCCGAAGCATTATTGGCCGGACGAC
CCGCTGGTGGCCGAGGCCACTGCCCGGGCCAAGCCACGCAAGTAG |
Translation:
MFPPCARPLVHNTRPSWKPRRVPARPPGCRWPCSTSPGSPANASSCSNRDAWRRGPRPSGWPPSWAKRVGET
VGYGIRLESRVGPKTRIEVVTEGILARRLQDDPALDGVGLVIFDEFQERSLDADLALALTLNGRELLRDEPP
LKVLVMSATLEGERLAALLGEAPVVRSEGRMFPVDIRWGRAAQPGEFIEPRVQQAVLQALAEESGSVLVFLP
GQAEIRRVHEGLREALGGRPEVLLCPLHGELDLAAQRAAIEPASRGTRKVVLATNIAETSLTIDGVRVVIDA
GLARVPRFDPGSGMTRLETQRISRASATQRAGRAGRLEPGVCYRLWSESQHEQLPAYGTAEILQADLAGLAL
QLARWGVAPEELAWLDAPPAAAYAQARELLGRLGALNASGALSAHGQAMAALPTHPRIAHLLLRGQALGLGE
LACDVAALLGERDIQRGGGADLHSRLALLAGEARAGASRGAVQRARQLARQFRGYLRGAASEAVVDPGHPRW
LGCLLAFAYPDRIARQRRAGGGDYRLANGRAAQFGEPDSLMKQPWLVIADLGSRQGQREERIYLAAELDPRL
FDTVLAEQVSQRDELQWDEREGVLRAERQRRVGELVLSSEALPGLDEAARSQALLGLVRRKGLELLPWTPEL
RQWQARIGLLRRLDLEDKGESEWPDVSDAALLERLEEWLPAYLGKVTRLAHFANLDLASILAGLLPWPLPQR
LDEWAPKTLEVPSGSRIRLDYSETPPILAVRLQELFGLGDTPRIAQGRLAVKLHLLSPAHRPVQVTQDLANF
WRSTYAEVRKDLKGRYPKHYWPDDPLVAEATARAKPRK* |
AnnotationID:246 | GeneID:236 |
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Modification Date/Time: |
2006-03-21 19:07:43 |
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GeneProduct: | putative ATP-dependent helicase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (11) DNA replication, recombination, modification and repair |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | gi|9950150|gb|AAG07348.1| probable ATP-dependent helicase [Pseudomonas aeruginosa PAO1]
gi|15599156|ref|NP_252650.1| probable ATP-dependent helicase [Pseudomonas aeruginosa PAO1]
Length=838
Score = 1326 bits (3431), Expect = 0.0, Method: Composition-based stats.
Identities = 757/765 (98%), Positives = 759/765 (99%), Gaps = 0/765 (0%)
gi|84319253|ref|ZP_00967653.1| COG1643: HrpA-like helicases [Pseudomonas aeruginosa C3719]
Length=838
Score = 1326 bits (3431), Expect = 0.0, Method: Composition-based stats.
Identities = 756/765 (98%), Positives = 759/765 (99%), Gaps = 0/765 (0%)
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Structural Features: | COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair].
CD-Length = 845 residues, 85.8% aligned
Score = 562 bits (1450), Expect = 6e-161Length = 845
Score = 673 bits (1738), Expect = 0.0
Identities = 326/766 (42%), Positives = 422/766 (55%), Gaps = 44/766 (5%)
dbj|BAB33575.1| (AP002550) ATP-dependent helicase [Escherichia coli O157:H7] Length: 901
PctIdentity: 41.17
PctSimilarity: 53.94
Gaps: 148
BitScore: 1545.0 |
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Comment: | N-terminus differs from PAO1 PA3961 and strain C3719 gene (gi|84319253|ref|ZP_00967653.1| ).
However, PA14 sequence quality in N-terminus is poor. |
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