ViewGene

Locus Name:
GeneID:
Location:

GeneID:236
TrivialName: PA14_12630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12630
PAO1 Ortholog Locus:
Sequence Length:2493
Protein Length:830
Start: 1082719
Stop: 1085211
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07348.1|AE004814_3 (AE004814) probable ATP-dependent helicase [Pseudomonas aeruginosa PAO1]
Identities = 757/764 (99%), Positives = 759/764 (99%)
Sequence:
TTGTTCCCGCCCTGCGCCAGGCCCTTGGTGCACAACACCAGGCCGTCCTGGAAGCCCCGCCGGGTGCCGGCA
AGACCACCCGGGTGCCGCTGGCCCTGCTCGACGAGCCCTGGCTCGCCGGCCaaCGCATCCTCATGCTCGAAC
CGCGACGCCTGGCGGCGCGgGCcGcGgccgagcggCTGGCCGCCGAGCTGGgcgaaaagggtcggcgAgacc
gtcggctacgggaTccgcctggaaaGCAGGGTCGGCCCGAAGACCCGCATCGAAGTGGTCACCGAGGGTATC
CTTGCCCGTCGCCTGCAAGACGACCCGGCGCTGGACGGTGTCGGCCTGGTGATCTTCGACGAATTCCAGGAG
CGCAGCCTGGATGCCGACCTGGCCCTGGCGCTGACTCTCAATGGCCGCGAACTGTTGCGCGACGAGCCGCCG
CTGAAAGTGCTGGTGATGTCGGCGACCCTGGAGGGCGAGCGTCTTGCGGCGCTGCTCGGCGAAGCGCCGGTG
GTGCGCAGCGAGGGCCGCATGTTCCCGGTGGATATCCGCTGGGGACGGGCGGCGCAACCCGGCGAGTTCATC
GAGCCGCGGGTGCAGCAGGCGGTGCTCCAGGCGCTGGCGGAGGAAAGCGGCAGCGTGCTGGTCTTTCTTCCC
GGCCAGGCCGAGATCCGCCGCGTTCACGAAGGCTTGCGCGAAGCCCTTGGCGGACGCCCCGAGGTGCTGCTC
TGCCCGCTGCATGGCGAGCTCGACCTCGCCGCCCAGCGCGCCGCCATCGAGCCGGCGTCGCGGGGCACGCGC
AAGGTGGTGCTGGCGACCAACATCGCCGAGACCAGCCTGACCATCGACGGCGTACGGGTGGTGATCGACGCC
GGCCTGGCGCGGGTGCCGCGCTTCGATCCGGGTAGCGGCATGACCCGCCTGGAGACCCAGCGCATCTCcCGC
GCCTCCGCTACCCAGCGTGCCGGCCGCGCAGGGCGCCTGGAGCCGGGCGTATGCTACCGCTTGTGGTCGGAG
AGCCAGCATGAGCAGTTGCCTGCCTACGGCACGGCGGAAATCCTCCAGGCCGATCTGGCCGGGCTGGCCCTG
CAACTGGCGCGCTGGGGCGTGGCGCCGGAGGAGCTGGCCTGGCTCGACGCGCCGCCCGCGGCGGCCTACGCC
CAGGCCCGCGAGCTGCTCGGGCGGCTGGGGGCGCTGAACGCCAGCGGTGCGTTGAGTGCCCATGGCCAGGCG
ATGGCCGCATTGCCGACCCATCCGCGCATTGCCCACCTGCTGCTGCGCGGCCAGGCCCTCGGCCTTGGCGAA
CTGGCTTGCGACGTAGCGGCGCTGCTCGGCGAACGTGACATACAGCGTGGCGGCGGCGCCGACCTGCACAGC
CGTCTCGCCCTGCTCGCCGGCGAGGCCCGCGCTGGCGCCTCGCGCGGCGCGGTACAGCGCGCCCGGCAACTG
GCCCGGCAGTTCCGCGGTTACCTGCGCGGCGCCGCCAGCGAAGCGGTCGTCGATCCCGGCCATCCTCGTTGG
CTGGGCTGTCTGCTGGCCTTCGCCTATCCCGACCGCATCGCTCGCCAGCGCCGCGCCGGCGGCGGCGACTAC
CGGCTGGCCAATGGGCGCGCTGCGCAGTTCGGCGAACCGGACAGCCTGATGAAGCAGCCCTGGCTGGTGATC
GCCGATCTGGGCAGCCGCCAGGGCCAGCGCGAAGAGCGGATCTACCTGGCCGCCGAACTCGATCCGAGGTTG
TTCGATACGGTCCTGGCGGAGCAGGTCAGCCAGCGCGACGAGCTGCAGTGGGACGAGCGCGAAGGCGTGCTG
CGCGCCGAGCGCCAGCGCCGGGTCGGCGAACTGGTGCTGTCCAGCGAGGCGCTACCCGGCCTCGACGAAGCG
GCGCGCAGCCAGGCGCTGCTCGGCCTGGTCCGGCGCAAGGGCCTGGAGTTGTTGCCCTGGACCCCGGAACTG
CGCCAGTGGCAGGCGCGCATCGGCTTGCTGCGCCGGCTGGACCTGGAAGACAAGGGCGAGAGCGAGTGGCCG
GACGTCAGCGACGCCGCGTTGCTGGAACGGTTGGAGGAATGGTTGCCGGCCTATCTCGGCAAGGTCACCCGC
CTGGCTCACTTCGCCAACCTCGACCTGGCTTCGATCCTCGCCGGGCTGCTGCCCTGGCCATTACCGCAGCGT
CTCGACGAGTGGGCACCGAAAACCCTGGAAGTCCCCTCCGGCTCGCGCATCCGCCTGGACTACAGCGAAACC
CCGCCGATCCTCGCGGTGCGCCTGCAGGAACTGTTCGGCCTCGGCGACACTCCGCGCATCGCCCAGGGCCGC
CTGGCAGTGAAGCTGCACCTGCTGTCTCCCGCGCATCGTCCGGTGCAGGTGACCCAGGACCTGGCGAACTTC
TGGCGCAGCACCTATGCGGAAGTCAGGAAGGACCTGAAGGGACGCTATCCGAAGCATTATTGGCCGGACGAC
CCGCTGGTGGCCGAGGCCACTGCCCGGGCCAAGCCACGCAAGTAG
Translation:
MFPPCARPLVHNTRPSWKPRRVPARPPGCRWPCSTSPGSPANASSCSNRDAWRRGPRPSGWPPSWAKRVGET
VGYGIRLESRVGPKTRIEVVTEGILARRLQDDPALDGVGLVIFDEFQERSLDADLALALTLNGRELLRDEPP
LKVLVMSATLEGERLAALLGEAPVVRSEGRMFPVDIRWGRAAQPGEFIEPRVQQAVLQALAEESGSVLVFLP
GQAEIRRVHEGLREALGGRPEVLLCPLHGELDLAAQRAAIEPASRGTRKVVLATNIAETSLTIDGVRVVIDA
GLARVPRFDPGSGMTRLETQRISRASATQRAGRAGRLEPGVCYRLWSESQHEQLPAYGTAEILQADLAGLAL
QLARWGVAPEELAWLDAPPAAAYAQARELLGRLGALNASGALSAHGQAMAALPTHPRIAHLLLRGQALGLGE
LACDVAALLGERDIQRGGGADLHSRLALLAGEARAGASRGAVQRARQLARQFRGYLRGAASEAVVDPGHPRW
LGCLLAFAYPDRIARQRRAGGGDYRLANGRAAQFGEPDSLMKQPWLVIADLGSRQGQREERIYLAAELDPRL
FDTVLAEQVSQRDELQWDEREGVLRAERQRRVGELVLSSEALPGLDEAARSQALLGLVRRKGLELLPWTPEL
RQWQARIGLLRRLDLEDKGESEWPDVSDAALLERLEEWLPAYLGKVTRLAHFANLDLASILAGLLPWPLPQR
LDEWAPKTLEVPSGSRIRLDYSETPPILAVRLQELFGLGDTPRIAQGRLAVKLHLLSPAHRPVQVTQDLANF
WRSTYAEVRKDLKGRYPKHYWPDDPLVAEATARAKPRK*
AnnotationID:246GeneID:236
AnnotatorUID: danlee
Modification Date/Time: 2006-03-21 19:07:43
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-dependent helicase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1643
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|9950150|gb|AAG07348.1|  probable ATP-dependent helicase [Pseudomonas aeruginosa PAO1]
 gi|15599156|ref|NP_252650.1|  probable ATP-dependent helicase [Pseudomonas aeruginosa PAO1]
Length=838

 Score = 1326 bits (3431),  Expect = 0.0, Method: Composition-based stats.
 Identities = 757/765 (98%), Positives = 759/765 (99%), Gaps = 0/765 (0%)

gi|84319253|ref|ZP_00967653.1|  COG1643: HrpA-like helicases [Pseudomonas aeruginosa C3719]
Length=838

 Score = 1326 bits (3431),  Expect = 0.0, Method: Composition-based stats.
 Identities = 756/765 (98%), Positives = 759/765 (99%), Gaps = 0/765 (0%)

Structural Features:
COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair].
             CD-Length = 845 residues,  85.8% aligned
             Score =  562 bits (1450), Expect = 6e-161Length = 845
Score =  673 bits (1738), Expect = 0.0
Identities = 326/766 (42%), Positives = 422/766 (55%), Gaps = 44/766 (5%)

dbj|BAB33575.1| (AP002550) ATP-dependent helicase [Escherichia coli O157:H7]  Length: 901
PctIdentity: 41.17
PctSimilarity: 53.94
Gaps: 148
BitScore: 1545.0
Genomic Context:
Comment:
N-terminus differs from PAO1 PA3961 and strain C3719 gene (gi|84319253|ref|ZP_00967653.1| ).  
However, PA14 sequence quality in N-terminus is poor.
ReferenceID:14089
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17617
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32261
Author/Investigator(s): Fujita,N., Mori,H., Yura,T. and Ishihama,A.
Title: Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region
PubMed: 8202364
MedLine: 94261430
Source:
Nucleic Acids Res. 22 (9), 1637-1639 (1994)
Reference Type:Online
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=2507332
Homologs By Global Alignment
Gene ID:236

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
401 PA3961_tr translation of PA3961 869 88.83 89.52 70 3848.0
22841 gb|AAG07348.1|AE004814_3 (AE004814) probable ATP-dependent helicase [Pseudomonas aeruginosa PAO1] 869 88.83 89.52 70 3848.0
22842 gb|AAN70342.1|AE016676_2 (AE016792) ATP-dependent helicase HrpB [Pseudomonas putida KT2440] 873 71.47 78.80 74 3107.0
22844 gb|AAO58176.1| (AE016873) ATP-dependent helicase HrpB, putative [Pseudomonas syringae pv. tomato str. DC3000] 840 63.33 70.00 161 2699.0
22843 gb|AAO58169.1| (AE016873) ATP-dependent helicase HrpB [Pseudomonas syringae pv. tomato str. DC3000] 870 62.98 75.63 70 2803.0
GC ORFID: 43238How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3961Glimmer Score:
Start: 3871219Stop: 3868727
Length: 2493
Start Codon: TTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3961 translation of PA3961Homolog Bit Score 1488.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5359 (ORF: BLASTX 1208.0), t_PA3961 (ORF: GLIMMER)
GC ORF Sequence
TTGTTCCCGCCCTGCGCCAGGCCCTTGGTGCACAACACCAGGCCGTCCTGGAAGCCCCGCCGGGTGCCGGCA
AGACCACCCGGGTGCCGCTGGCCCTGCTCGACGAGCCCTGGCTCGCCGGCCaaCGCATCCTCATGCTCGAAC
CGCGACGCCTGGCGGCGCGgGCcGcGgccgagcggCTGGCCGCCGAGCTGGgcgaaaagggtcggcgAgacc
gtcggctacgggaTccgcctggaaaGCAGGGTCGGCCCGAAGACCCGCATCGAAGTGGTCACCGAGGGTATC
CTTGCCCGTCGCCTGCAAGACGACCCGGCGCTGGACGGTGTCGGCCTGGTGATCTTCGACGAATTCCAGGAG
CGCAGCCTGGATGCCGACCTGGCCCTGGCGCTGACTCTCAATGGCCGCGAACTGTTGCGCGACGAGCCGCCG
CTGAAAGTGCTGGTGATGTCGGCGACCCTGGAGGGCGAGCGTCTTGCGGCGCTGCTCGGCGAAGCGCCGGTG
GTGCGCAGCGAGGGCCGCATGTTCCCGGTGGATATCCGCTGGGGACGGGCGGCGCAACCCGGCGAGTTCATC
GAGCCGCGGGTGCAGCAGGCGGTGCTCCAGGCGCTGGCGGAGGAAAGCGGCAGCGTGCTGGTCTTTCTTCCC
GGCCAGGCCGAGATCCGCCGCGTTCACGAAGGCTTGCGCGAAGCCCTTGGCGGACGCCCCGAGGTGCTGCTC
TGCCCGCTGCATGGCGAGCTCGACCTCGCCGCCCAGCGCGCCGCCATCGAGCCGGCGTCGCGGGGCACGCGC
AAGGTGGTGCTGGCGACCAACATCGCCGAGACCAGCCTGACCATCGACGGCGTACGGGTGGTGATCGACGCC
GGCCTGGCGCGGGTGCCGCGCTTCGATCCGGGTAGCGGCATGACCCGCCTGGAGACCCAGCGCATCTCcCGC
GCCTCCGCTACCCAGCGTGCCGGCCGCGCAGGGCGCCTGGAGCCGGGCGTATGCTACCGCTTGTGGTCGGAG
AGCCAGCATGAGCAGTTGCCTGCCTACGGCACGGCGGAAATCCTCCAGGCCGATCTGGCCGGGCTGGCCCTG
CAACTGGCGCGCTGGGGCGTGGCGCCGGAGGAGCTGGCCTGGCTCGACGCGCCGCCCGCGGCGGCCTACGCC
CAGGCCCGCGAGCTGCTCGGGCGGCTGGGGGCGCTGAACGCCAGCGGTGCGTTGAGTGCCCATGGCCAGGCG
ATGGCCGCATTGCCGACCCATCCGCGCATTGCCCACCTGCTGCTGCGCGGCCAGGCCCTCGGCCTTGGCGAA
CTGGCTTGCGACGTAGCGGCGCTGCTCGGCGAACGTGACATACAGCGTGGCGGCGGCGCCGACCTGCACAGC
CGTCTCGCCCTGCTCGCCGGCGAGGCCCGCGCTGGCGCCTCGCGCGGCGCGGTACAGCGCGCCCGGCAACTG
GCCCGGCAGTTCCGCGGTTACCTGCGCGGCGCCGCCAGCGAAGCGGTCGTCGATCCCGGCCATCCTCGTTGG
CTGGGCTGTCTGCTGGCCTTCGCCTATCCCGACCGCATCGCTCGCCAGCGCCGCGCCGGCGGCGGCGACTAC
CGGCTGGCCAATGGGCGCGCTGCGCAGTTCGGCGAACCGGACAGCCTGATGAAGCAGCCCTGGCTGGTGATC
GCCGATCTGGGCAGCCGCCAGGGCCAGCGCGAAGAGCGGATCTACCTGGCCGCCGAACTCGATCCGAGGTTG
TTCGATACGGTCCTGGCGGAGCAGGTCAGCCAGCGCGACGAGCTGCAGTGGGACGAGCGCGAAGGCGTGCTG
CGCGCCGAGCGCCAGCGCCGGGTCGGCGAACTGGTGCTGTCCAGCGAGGCGCTACCCGGCCTCGACGAAGCG
GCGCGCAGCCAGGCGCTGCTCGGCCTGGTCCGGCGCAAGGGCCTGGAGTTGTTGCCCTGGACCCCGGAACTG
CGCCAGTGGCAGGCGCGCATCGGCTTGCTGCGCCGGCTGGACCTGGAAGACAAGGGCGAGAGCGAGTGGCCG
GACGTCAGCGACGCCGCGTTGCTGGAACGGTTGGAGGAATGGTTGCCGGCCTATCTCGGCAAGGTCACCCGC
CTGGCTCACTTCGCCAACCTCGACCTGGCTTCGATCCTCGCCGGGCTGCTGCCCTGGCCATTACCGCAGCGT
CTCGACGAGTGGGCACCGAAAACCCTGGAAGTCCCCTCCGGCTCGCGCATCCGCCTGGACTACAGCGAAACC
CCGCCGATCCTCGCGGTGCGCCTGCAGGAACTGTTCGGCCTCGGCGACACTCCGCGCATCGCCCAGGGCCGC
CTGGCAGTGAAGCTGCACCTGCTGTCTCCCGCGCATCGTCCGGTGCAGGTGACCCAGGACCTGGCGAACTTC
TGGCGCAGCACCTATGCGGAAGTCAGGAAGGACCTGAAGGGACGCTATCCGAAGCATTATTGGCCGGACGAC
CCGCTGGTGGCCGAGGCCACTGCCCGGGCCAAGCCACGCAAGTAG