ViewGene
Locus Name:
GeneID:
Location:

GeneID:2359
TrivialName: PA14_28170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28170
PAO1 Ortholog Locus:PA2777
Sequence Length:957
Protein Length:318
Start: 2438270
Stop: 2439226
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06165.1|AE004705_7 (AE004705) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 310/318 (97%), Positives = 314/318 (98%)
Sequence:
ATGGCCAACGACAAGCAGACTTCGACTCCCGGCCCCCGACAACCGGCCAAGGGCGGTGCGGCGAGCAAGCGC
CAGGGGCATGCGGCGGAGGGCACGCGCAAGCCGCGTGCGCGCGGCGAGGAGCGGAAAGAGAAACCGGCCGAC
GGACGTTCGGCCACGGCGCTGACCGCCAACGAGCGGCGGGAGATCGACGACAAGCAGCCACCGCGCGCCGCT
GTCCTGCACGAGGTGATTCGCGTCCAGGGCGAACACGAGTTGCAGCGCACGGTGGCGGCACTCTGGTGGTCG
GCGGTAGCCGCGGGGCTGACCATCGGCCTCTCGTTGATGGGCATGGGCCTGTTCCGCGCTGCCTTGCCCGAG
CAGGAGTGGGCGATCATCGTCAGCAGCTTCGGCTATCCCATGGGCTTCCTGGCAGTGATCCTCGCCCGCCAG
CAACTGTTCACCGAAAACACCCTGACCGCCGTGTTGCCGGTGATGACCGAGCCGACCCTGGAAAAGGCCTGG
CAACTGTTGCGTCTCTGGAGCGTGGTGCTGTTCGGCAATATCGTCGGTACGCTGCTGTTCGCCTGGGCGGTG
CTGCATCTGCCGATCTTCAATGAAGCGGCCGACGCGGCGTTCCTTGAGATCGGCCGCGAGGTGATGCACAAC
GACCTGGCGCAGATGTTCGCCAAGGGCATCGTTTCCGGCTGGATGATCGCCACCATGGTCTGGCTGATCCCG
GCGGCGGAGGGCGCGAAGGTCTGGATCATCGCGATGGTCACCTACCTGATGGCGCTGGGCAGCTTCACCCAC
ATCGTGGTGGGTTCGGCGGAGGTAGGCTACCTGGCGTTCGCCGGGGAAATCGACTGGTCCGAGTTCCTGCTG
AAGTTCGCCCTGCCTACCCTGGGCGGCAACATAGTCGGCGGTAGCCTGATCTTCGCCCTGATCAGTCATGCG
CAGATCCGTAGCGAAGGTTGA
Translation:
MANDKQTSTPGPRQPAKGGAASKRQGHAAEGTRKPRARGEERKEKPADGRSATALTANERREIDDKQPPRAA
VLHEVIRVQGEHELQRTVAALWWSAVAAGLTIGLSLMGMGLFRAALPEQEWAIIVSSFGYPMGFLAVILARQ
QLFTENTLTAVLPVMTEPTLEKAWQLLRLWSVVLFGNIVGTLLFAWAVLHLPIFNEAADAAFLEIGREVMHN
DLAQMFAKGIVSGWMIATMVWLIPAAEGAKVWIIAMVTYLMALGSFTHIVVGSAEVGYLAFAGEIDWSEFLL
KFALPTLGGNIVGGSLIFALISHAQIRSEG*
AnnotationID:2367GeneID:2359
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 02:02:33
Gene Name:
Confidence Code:3
GeneProduct:putative transporter, formate/nitrite transporter family
Cell Localization:()
Synonyms:yfdC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2116
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66781.1|AE016306_7 (AE016778) transporter, formate/nitrite transporter family,
           putative [Pseudomonas putida KT2440]
          Length = 298

 Score =  381 bits (979), Expect = e-105
 Identities = 187/263 (71%), Positives = 218/263 (82%)

>gb|AAO56774.1| (AE016867) transporter, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 311

 Score =  365 bits (936), Expect = e-100
 Identities = 182/263 (69%), Positives = 216/263 (82%)

>gb|AAN81342.1|AE016764_24 (AE016764) Hypothetical protein yfdC [Escherichia coli CFT073]
          Length = 310

 Score =  289 bits (739), Expect = 2e-77
 Identities = 142/257 (55%), Positives = 187/257 (72%), Gaps = 1/257 (0%)






 
Structural Features:
COG2116, FocA, Formate/nitrite family of transporters 
[Inorganic ion transport and metabolism]
CD-Length = 265 residues,  97.0% aligned
Score =  203 bits (519), Expect = 2e-53
Identities = 77/263 (29%), Positives = 119/263 (45%), Gaps = 15/263 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4721




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21867




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36271




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2359_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2359
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4001
                           PA2777_tr
                           translation of PA2777
                           318
                           97.48
                           98.74
                           0
                           1589.0
     

     
     
120853
                           gb|AAG06165.1|AE004705_7
                           (AE004705) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           318
                           97.48
                           98.74
                           0
                           1589.0
     

     
     
120854
                           gb|AAN66781.1|AE016306_7
                           (AE016778) transporter, formate/nitrite transporter family, putative [Pseudomonas putida KT2440]
                           343
                           55.10
                           65.01
                           70
                           978.0
     

     
     
120855
                           gb|AAO56774.1|
                           (AE016867) transporter, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           354
                           51.69
                           62.42
                           79
                           933.0
     

     
     
120861
                           dbj|BAB36653.1|
                           (AP002561) putative transport [Escherichia coli O157:H7]
                           345
                           44.05
                           58.26
                           62
                           729.0
     

     






      

          
GC ORFID: 45361How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2777Glimmer Score: 

          
Start: 2515656Stop: 2514700

          
Length: 957


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2777 translation of PA2777Homolog Bit Score 616.0

          
Other Homologs:  t_PA2777 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAACGACAAGCAGACTTCGACTCCCGGCCCCCGACAACCGGCCAAGGGCGGTGCGGCGAGCAAGCGC 
CAGGGGCATGCGGCGGAGGGCACGCGCAAGCCGCGTGCGCGCGGCGAGGAGCGGAAAGAGAAACCGGCCGAC 
GGACGTTCGGCCACGGCGCTGACCGCCAACGAGCGGCGGGAGATCGACGACAAGCAGCCACCGCGCGCCGCT 
GTCCTGCACGAGGTGATTCGCGTCCAGGGCGAACACGAGTTGCAGCGCACGGTGGCGGCACTCTGGTGGTCG 
GCGGTAGCCGCGGGGCTGACCATCGGCCTCTCGTTGATGGGCATGGGCCTGTTCCGCGCTGCCTTGCCCGAG 
CAGGAGTGGGCGATCATCGTCAGCAGCTTCGGCTATCCCATGGGCTTCCTGGCAGTGATCCTCGCCCGCCAG 
CAACTGTTCACCGAAAACACCCTGACCGCCGTGTTGCCGGTGATGACCGAGCCGACCCTGGAAAAGGCCTGG 
CAACTGTTGCGTCTCTGGAGCGTGGTGCTGTTCGGCAATATCGTCGGTACGCTGCTGTTCGCCTGGGCGGTG 
CTGCATCTGCCGATCTTCAATGAAGCGGCCGACGCGGCGTTCCTTGAGATCGGCCGCGAGGTGATGCACAAC 
GACCTGGCGCAGATGTTCGCCAAGGGCATCGTTTCCGGCTGGATGATCGCCACCATGGTCTGGCTGATCCCG 
GCGGCGGAGGGCGCGAAGGTCTGGATCATCGCGATGGTCACCTACCTGATGGCGCTGGGCAGCTTCACCCAC 
ATCGTGGTGGGTTCGGCGGAGGTAGGCTACCTGGCGTTCGCCGGGGAAATCGACTGGTCCGAGTTCCTGCTG 
AAGTTCGCCCTGCCTACCCTGGGCGGCAACATAGTCGGCGGTAGCCTGATCTTCGCCCTGATCAGTCATGCG 
CAGATCCGTAGCGAAGGTTGA