ViewGene
Locus Name:
GeneID:
Location:

GeneID:2358
TrivialName: PA14_37120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37120
PAO1 Ortholog Locus:PA2123
Sequence Length:933
Protein Length:310
Start: 3308224
Stop: 3307292
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05511.1|AE004639_9 (AE004639) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 309/310 (99%), Positives = 309/310 (99%)
Sequence:
ATGAACAAGTTTGCCGAAATGACCACCTTCGTCAGCGTGGTCGACGCCCGTAGCTTCTCCGAAGCCGCCCGC
CGCCTGGGCACCACCAAGTCGCAAGTCAGCCAGCGTATCCAGCAACTGGAGAGGCGCCTGGGCCGGGTGCTG
CTGAACCGCACCCGGCCGCTGAGCCTCACCGACCCCGGTCGCACCTACTACGAACACGCCTGCCGCCTGCTA
CAGGAGCTGGAGCAGGCGGAAGCCTCGGTGCTCGACGCCGACGACGACCTGCGCGGCCAGTTGCGCCTCTCC
GCGCCGCTGGCCTTCACTCCGCGCTACCTGGCGCCGCTGCTGGCGCGCTTCGCCGAGCGCCATCCGCAATTG
CGGGTGGACGTGCAGGCCGACGATCGTTTCGTCAACCTCCAGGAACCGCGCTTCGACATGGCCCTGCGCATG
GGCCGGCTGGACGACTCCTGCCTGGTGGCGCGGCCGATCACCGCCAACCGCCACCTGCTCTGCGCCAGTCCC
GACTACCTGGCGCGGCATGGCGTGCCGCAGCATCCCGAGGAATTACAGGCGCACGACGGGCTGGTCTACTAC
AACCGCGAGCCCGGCGGCATGCTCTGTCTGCCGGTGGACGGCGAACCGGCCTCGTTCCGCATCCGGGTGAGG
ATGCGCACCGACTCCGGGCACCAGTTGCTCGAAGGTGCGCGCGCCGGGCTCGGCCTGGCGATCCTGCCGAGC
TTCCTGGCCGCCGATGCCTTGCTGGCCGGCGAGCTGCTGCCGGTCCTGCCTGGCTACTCGCCGGACGGCGGG
CAGGTTTCCGTGGTCTACCGCAAGACCCAACGGACGCCCCGGAAGATCCTCGTCCTCGGCCAGTTCCTCGAA
GAGGAAATCGGCGATCCGGCGCCCTGGGACCGCGCGCTCATCGAGCGTGGCCTGTTGCCGCCGGGCTGA
Translation:
MNKFAEMTTFVSVVDARSFSEAARRLGTTKSQVSQRIQQLERRLGRVLLNRTRPLSLTDPGRTYYEHACRLL
QELEQAEASVLDADDDLRGQLRLSAPLAFTPRYLAPLLARFAERHPQLRVDVQADDRFVNLQEPRFDMALRM
GRLDDSCLVARPITANRHLLCASPDYLARHGVPQHPEELQAHDGLVYYNREPGGMLCLPVDGEPASFRIRVR
MRTDSGHQLLEGARAGLGLAILPSFLAADALLAGELLPVLPGYSPDGGQVSVVYRKTQRTPRKILVLGQFLE
EEIGDPAPWDRALIERGLLPPG*
AnnotationID:2366GeneID:2358
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 09:09:50
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2123
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55307.1| (AE016862) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 301

 Score =  206 bits (525), Expect = 1e-52
 Identities = 123/301 (40%), Positives = 175/301 (58%), Gaps = 3/301 (0%)

>emb|CAD18061.1| (AL646081) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 309

 Score =  196 bits (498), Expect = 1e-49
 Identities = 109/306 (35%), Positives = 174/306 (56%), Gaps = 7/306 (2%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.7% aligned
Score =  135 bits (340), Expect = 6e-33
Identities = 96/301 (31%), Positives = 144/301 (47%), Gaps = 11/301 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  99.5% aligned
Score =  105 bits (264), Expect = 6e-24
Identities = 66/209 (31%), Positives = 92/209 (44%), Gaps = 4/209 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4719




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21865




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32599




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2358_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2358
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4000
                           PA2123_tr
                           translation of PA2123
                           310
                           99.67
                           99.67
                           0
                           1589.0
     

     
     
120845
                           gb|AAG05511.1|AE004639_9
                           (AE004639) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           310
                           99.67
                           99.67
                           0
                           1589.0
     

     
     
120849
                           emb|CAD17120.1|
                           (AL646074) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           317
                           40.06
                           56.15
                           26
                           500.0
     

     
     
120850
                           gb|AAQ61143.1|
                           (AE016922) probable transcriptional regulator, LysR family [Chromobacterium violaceum ATCC 12472]
                           329
                           38.90
                           53.49
                           33
                           504.0
     

     
     
120846
                           gb|AAO55307.1|
                           (AE016862) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           324
                           38.27
                           54.32
                           37
                           537.0
     

     






      

          
GC ORFID: 45360How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2123Glimmer Score: 

          
Start: 1645690Stop: 1646622

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2123 translation of PA2123Homolog Bit Score 616.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7767 (ORF: BLASTX 202.0), t_PA2123 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAAGTTTGCCGAAATGACCACCTTCGTCAGCGTGGTCGACGCCCGTAGCTTCTCCGAAGCCGCCCGC 
CGCCTGGGCACCACCAAGTCGCAAGTCAGCCAGCGTATCCAGCAACTGGAGAGGCGCCTGGGCCGGGTGCTG 
CTGAACCGCACCCGGCCGCTGAGCCTCACCGACCCCGGTCGCACCTACTACGAACACGCCTGCCGCCTGCTA 
CAGGAGCTGGAGCAGGCGGAAGCCTCGGTGCTCGACGCCGACGACGACCTGCGCGGCCAGTTGCGCCTCTCC 
GCGCCGCTGGCCTTCACTCCGCGCTACCTGGCGCCGCTGCTGGCGCGCTTCGCCGAGCGCCATCCGCAATTG 
CGGGTGGACGTGCAGGCCGACGATCGTTTCGTCAACCTCCAGGAACCGCGCTTCGACATGGCCCTGCGCATG 
GGCCGGCTGGACGACTCCTGCCTGGTGGCGCGGCCGATCACCGCCAACCGCCACCTGCTCTGCGCCAGTCCC 
GACTACCTGGCGCGGCATGGCGTGCCGCAGCATCCCGAGGAATTACAGGCGCACGACGGGCTGGTCTACTAC 
AACCGCGAGCCCGGCGGCATGCTCTGTCTGCCGGTGGACGGCGAACCGGCCTCGTTCCGCATCCGGGTGAGG 
ATGCGCACCGACTCCGGGCACCAGTTGCTCGAAGGTGCGCGCGCCGGGCTCGGCCTGGCGATCCTGCCGAGC 
TTCCTGGCCGCCGATGCCTTGCTGGCCGGCGAGCTGCTGCCGGTCCTGCCTGGCTACTCGCCGGACGGCGGG 
CAGGTTTCCGTGGTCTACCGCAAGACCCAACGGACGCCCCGGAAGATCCTCGTCCTCGGCCAGTTCCTCGAA 
GAGGAAATCGGCGATCCGGCGCCCTGGGACCGCGCGCTCATCGAGCGTGGCCTGTTGCCGCCGGGCTGA