ViewGene
Locus Name:
GeneID:
Location:

GeneID:2357
TrivialName: PA14_66520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66520
PAO1 Ortholog Locus:PA5031
Sequence Length:930
Protein Length:309
Start: 5934032
Stop: 5933103
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08416.1|AE004916_5 (AE004916) probable short chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 307/309 (99%), Positives = 307/309 (99%)
Sequence:
ATGCATCCCTGGGCACGACGCAACATTCCGCAACTGGCCGGGCGCCTGGCGCTGGTCACCGGCGCCAACAGC
GGCCTGGGTTGGCAGGCGGCGCGCACGCTGGCCGGCAAAGGGGCAACCGTGGTGATGGCCTGCCGCAATCGC
GAACAGGCGGAGCGGGCGCGGCGGGCGATCCTCGACGAGTATCCCCAGGCACGCCTGGAGCTGGCCGATCTC
GACCTGGCCGACCTCGCCTCGATCCGCGCCTGCGCCGCCGGTTTCCGCCAGCGCCACGAACGCCTCGATCTC
TTGTTCAACAACGCCGGAGTGATGTTCCTGCCCCTGCGGCGTACCCGCGACGGTTTCGAGATGCAGATGGGC
ACCAATCACCTTGGCCACTTCGCGCTTACGGGACTGCTGCTGGACTCGTTGCTGGCCGCTCCACGGCCCAGG
GTGGTGGGTATGACCAGCGGTTTCAACCAGTTCGGCCGGCTGCCGCTCGACGACCTCAACGCCGAGCGCGGC
TACAACCGCTATCTCGCCTATTGCCACAGCAAGCAGGCCAATCTGCTGTTCAGCCTGGAGTTGCAGCGCCGC
GCCGGCCAGCGGGGCGTGCTTCTGCAGAGCCTGGCGGCGCATCCGGGCTACGCGGCGACCAACCTGCAGTAC
GCGGCACCGGCGATGTCCGGTTCGCGCCTGGGACGCTGGGCGATGAAGGTGGCCAACGGAGCGTTCGCGCAA
TCGGCGGAGATGGGGGCGTTGCCGGCACTTTCCGCGCTGACCGAACAGCGCTGGTATGGCGGCGCCTATGTC
GGCCCGGATCGCTGGCTGGAAACCCGCGGTTATCCGGCGGCGGCGCGGATTCCGCGGAATGCGCGCGACCTG
GGGCTGGCCGCGCGGCTGTGGGCGCTATCGGAAGAACTGACCGGAGTACGCTTCTGGTCGGAGTGA
Translation:
MHPWARRNIPQLAGRLALVTGANSGLGWQAARTLAGKGATVVMACRNREQAERARRAILDEYPQARLELADL
DLADLASIRACAAGFRQRHERLDLLFNNAGVMFLPLRRTRDGFEMQMGTNHLGHFALTGLLLDSLLAAPRPR
VVGMTSGFNQFGRLPLDDLNAERGYNRYLAYCHSKQANLLFSLELQRRAGQRGVLLQSLAAHPGYAATNLQY
AAPAMSGSRLGRWAMKVANGAFAQSAEMGALPALSALTEQRWYGGAYVGPDRWLETRGYPAAARIPRNARDL
GLAARLWALSEELTGVRFWSE*
AnnotationID:2365GeneID:2357
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 14:02:14
Gene Name:
Confidence Code:3
GeneProduct:putative short chain dehydrogenase
Cell Localization:()
Synonyms:PA5031
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1028
Secondary Functional Category(ies):Secondary metabolites biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC73371.1| (AP005043) putative oxidoreductase [Streptomyces avermitilis
           MA-4680]
          Length = 308

 Score =  260 bits (665), Expect = 6e-69
 Identities = 152/307 (49%), Positives = 185/307 (60%), Gaps = 5/307 (1%)

>emb|CAB69779.1| (AL939112) putative oxidoreductase [Streptomyces coelicolor A3(2)]
          Length = 310

 Score =  255 bits (651), Expect = 3e-67
 Identities = 154/306 (50%), Positives = 189/306 (61%), Gaps = 5/306 (1%)








 
Structural Features:
COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  94.0% aligned
Score =   99 bits (248), Expect = 3e-22
Identities = 75/253 (29%), Positives = 109/253 (43%), Gaps = 22/253 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4717




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21863




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35008




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2357_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2357
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3999
                           PA5031_tr
                           translation of PA5031
                           309
                           99.35
                           99.35
                           0
                           1592.0
     

     
     
120818
                           gb|AAG08416.1|AE004916_5
                           (AE004916) probable short chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           309
                           99.35
                           99.35
                           0
                           1592.0
     

     
     
120820
                           emb|CAB69779.1|
                           (AL939112) putative oxidoreductase [Streptomyces coelicolor A3(2)]
                           315
                           49.20
                           60.63
                           11
                           657.0
     

     
     
120819
                           dbj|BAC73371.1|
                           (AP005043) putative oxidoreductase [Streptomyces avermitilis MA-4680]
                           314
                           48.72
                           59.23
                           11
                           670.0
     

     
     
120825
                           emb|CAE08915.1|
                           (BX569695) Short-chain dehydrogenase/reductase (SDR) superfamily [Synechococcus sp. WH 8102]
                           309
                           48.54
                           60.19
                           4
                           632.0
     

     






      

          
GC ORFID: 45359How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5031Glimmer Score: 

          
Start: 5197715Stop: 5196786

          
Length: 930


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5031 translation of PA5031Homolog Bit Score 617.0

          
Other Homologs:  t_PA5031 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATCCCTGGGCACGACGCAACATTCCGCAACTGGCCGGGCGCCTGGCGCTGGTCACCGGCGCCAACAGC 
GGCCTGGGTTGGCAGGCGGCGCGCACGCTGGCCGGCAAAGGGGCAACCGTGGTGATGGCCTGCCGCAATCGC 
GAACAGGCGGAGCGGGCGCGGCGGGCGATCCTCGACGAGTATCCCCAGGCACGCCTGGAGCTGGCCGATCTC 
GACCTGGCCGACCTCGCCTCGATCCGCGCCTGCGCCGCCGGTTTCCGCCAGCGCCACGAACGCCTCGATCTC 
TTGTTCAACAACGCCGGAGTGATGTTCCTGCCCCTGCGGCGTACCCGCGACGGTTTCGAGATGCAGATGGGC 
ACCAATCACCTTGGCCACTTCGCGCTTACGGGACTGCTGCTGGACTCGTTGCTGGCCGCTCCACGGCCCAGG 
GTGGTGGGTATGACCAGCGGTTTCAACCAGTTCGGCCGGCTGCCGCTCGACGACCTCAACGCCGAGCGCGGC 
TACAACCGCTATCTCGCCTATTGCCACAGCAAGCAGGCCAATCTGCTGTTCAGCCTGGAGTTGCAGCGCCGC 
GCCGGCCAGCGGGGCGTGCTTCTGCAGAGCCTGGCGGCGCATCCGGGCTACGCGGCGACCAACCTGCAGTAC 
GCGGCACCGGCGATGTCCGGTTCGCGCCTGGGACGCTGGGCGATGAAGGTGGCCAACGGAGCGTTCGCGCAA 
TCGGCGGAGATGGGGGCGTTGCCGGCACTTTCCGCGCTGACCGAACAGCGCTGGTATGGCGGCGCCTATGTC 
GGCCCGGATCGCTGGCTGGAAACCCGCGGTTATCCGGCGGCGGCGCGGATTCCGCGGAATGCGCGCGACCTG 
GGGCTGGCCGCGCGGCTGTGGGCGCTATCGGAAGAACTGACCGGAGTACGCTTCTGGTCGGAGTGA